immunoClust: immunoClust - Automated Pipeline for Population Detection in Flow Cytometry

Model based clustering and meta-clustering of Flow Cytometry Data

Author
Till Soerensen <till-antoni.soerensen@charite.de>
Date of publication
None
Maintainer
Till Soerensen <till-antoni.soerensen@charite.de>
License
Artistic-2.0
Version
1.6.0

View on Bioconductor

Man pages

cell.ClustData
Model Based Clustering of Data for a pre-defined Number of...
cell.EM
immunoClust EMt-iteration on Cell-events given initial Model...
cell.FitModel
immunoClust EMt-iteration on Cell-events given initial Model...
cell.hclust
Hierarchical Model Based Clustering of Cell-events in the...
cell.ME
immunoClust EM-iteration on Cell-events given initial Cluster...
cell.process
Clustering of Cell-events in the immunoClust-pipeline
cell.removed
Brief Information of removed Cell-events by immunoClust...
cell.SubClustering
immunoClust Model Refinement Step in iterative Cell-events...
dat.exp
immunoClust Meta-clustering Sample
dat.fcs
immunoClust Cell-clustering Sample
dat.meta
immunoClust Meta-clustering Results Sample
immunoClust.object
immunoClust-Object
immunoClust-package
immunoClust - Automated Pipeline for Population Detection in...
meta.clustering
Clustering of Cell-clusters in the immunoClust-pipeline
meta.export
immunoClust Meta-clustering Results Export
meta.exprs
Collecting Data of an immunoClust vector
meta.hclust
Hierarchical Meta-clustering of Cell-clusters in the...
meta.ME
immunoClust EM(t)-iteration on Cell-clusters
meta.normalize
immunoClust normalization step with the meta.clustering...
meta.plot
Ploting of immunoClust Meta-clustering Results
meta.process
Meta-clustering of Cell-clusters in the immunoClust-pipeline
meta.regnorm
immunoClust normalization procedure
meta.SubClustering
immunoClust Model Refinement Step in iterative...
plot.immunoClust
Scatterplot of immunoClust Clustering Results
splom.immunoClust
Scatterplot Matrix of immunoClust Clustering Results
trans.ApplyToData
immunoClust asinh-Transformation
trans.FitToData
immunoClust asinh-Transformation Optimization

Files in this package

immunoClust/DESCRIPTION
immunoClust/NAMESPACE
immunoClust/NEWS
immunoClust/R
immunoClust/R/cell.clustering.R
immunoClust/R/class.immunoClust.R
immunoClust/R/clust.util.R
immunoClust/R/data.R
immunoClust/R/meta.clustering.R
immunoClust/R/meta.export.R
immunoClust/R/meta.gating.R
immunoClust/R/meta.plot.R
immunoClust/R/plot.immunoClust.R
immunoClust/R/process.R
immunoClust/R/splom.immunoClust.R
immunoClust/R/transform.R
immunoClust/a.out.dSYM
immunoClust/a.out.dSYM/Contents
immunoClust/a.out.dSYM/Contents/Info.plist
immunoClust/a.out.dSYM/Contents/Resources
immunoClust/a.out.dSYM/Contents/Resources/DWARF
immunoClust/a.out.dSYM/Contents/Resources/DWARF/a.out
immunoClust/aclocal.m4
immunoClust/build
immunoClust/build/vignette.rds
immunoClust/cleanup
immunoClust/configure
immunoClust/configure.ac
immunoClust/data
immunoClust/data/dat.exp.RData
immunoClust/data/dat.fcs.RData
immunoClust/data/dat.meta.RData
immunoClust/inst
immunoClust/inst/doc
immunoClust/inst/doc/immunoClust.R
immunoClust/inst/doc/immunoClust.Rnw
immunoClust/inst/doc/immunoClust.pdf
immunoClust/man
immunoClust/man/cell.ClustData.Rd
immunoClust/man/cell.EM.Rd
immunoClust/man/cell.FitModel.Rd
immunoClust/man/cell.ME.Rd
immunoClust/man/cell.SubClustering.Rd
immunoClust/man/cell.hclust.Rd
immunoClust/man/cell.process.Rd
immunoClust/man/cell.removed.Rd
immunoClust/man/dat.exp.Rd
immunoClust/man/dat.fcs.Rd
immunoClust/man/dat.meta.Rd
immunoClust/man/immunoClust-package.Rd
immunoClust/man/immunoClust.object.Rd
immunoClust/man/meta.ME.Rd
immunoClust/man/meta.SubClustering.Rd
immunoClust/man/meta.clustering.Rd
immunoClust/man/meta.export.Rd
immunoClust/man/meta.exprs.Rd
immunoClust/man/meta.hclust.Rd
immunoClust/man/meta.normalize.Rd
immunoClust/man/meta.plot.Rd
immunoClust/man/meta.process.Rd
immunoClust/man/meta.regnorm.Rd
immunoClust/man/plot.immunoClust.Rd
immunoClust/man/splom.immunoClust.Rd
immunoClust/man/trans.ApplyToData.Rd
immunoClust/man/trans.FitToData.Rd
immunoClust/src
immunoClust/src/Makevars.in
immunoClust/src/Makevars.win
immunoClust/src/R_meta.cpp
immunoClust/src/R_model.cpp
immunoClust/src/dist_mvn.cpp
immunoClust/src/dist_mvn.h
immunoClust/src/em_meta.cpp
immunoClust/src/em_meta.h
immunoClust/src/em_mvn.cpp
immunoClust/src/em_mvn.h
immunoClust/src/em_mvt.cpp
immunoClust/src/em_mvt.h
immunoClust/src/hc_meta.cpp
immunoClust/src/hc_meta.h
immunoClust/src/hc_mvn.cpp
immunoClust/src/hc_mvn.h
immunoClust/src/immunoClust.c
immunoClust/src/immunoClust.h
immunoClust/src/meta_gpa.cpp
immunoClust/src/meta_gpa.h
immunoClust/src/meta_norm.cpp
immunoClust/src/meta_norm.h
immunoClust/src/meta_scale.cpp
immunoClust/src/meta_scale.h
immunoClust/src/normalize.cpp
immunoClust/src/normalize.h
immunoClust/src/sub_mvn.cpp
immunoClust/src/sub_mvn.h
immunoClust/src/util.cpp
immunoClust/src/util.h
immunoClust/src/vs_htrans.cpp
immunoClust/src/vs_htrans.h
immunoClust/vignettes
immunoClust/vignettes/immunoClust.Rnw