immunoClust: immunoClust - Automated Pipeline for Population Detection in Flow Cytometry

Model based clustering and meta-clustering of Flow Cytometry Data

AuthorTill Soerensen <till-antoni.soerensen@charite.de>
Date of publicationNone
MaintainerTill Soerensen <till-antoni.soerensen@charite.de>
LicenseArtistic-2.0
Version1.6.0

View on Bioconductor

Man pages

cell.ClustData: Model Based Clustering of Data for a pre-defined Number of...

cell.EM: immunoClust EMt-iteration on Cell-events given initial Model...

cell.FitModel: immunoClust EMt-iteration on Cell-events given initial Model...

cell.hclust: Hierarchical Model Based Clustering of Cell-events in the...

cell.ME: immunoClust EM-iteration on Cell-events given initial Cluster...

cell.process: Clustering of Cell-events in the immunoClust-pipeline

cell.removed: Brief Information of removed Cell-events by immunoClust...

cell.SubClustering: immunoClust Model Refinement Step in iterative Cell-events...

dat.exp: immunoClust Meta-clustering Sample

dat.fcs: immunoClust Cell-clustering Sample

dat.meta: immunoClust Meta-clustering Results Sample

immunoClust.object: immunoClust-Object

immunoClust-package: immunoClust - Automated Pipeline for Population Detection in...

meta.clustering: Clustering of Cell-clusters in the immunoClust-pipeline

meta.export: immunoClust Meta-clustering Results Export

meta.exprs: Collecting Data of an immunoClust vector

meta.hclust: Hierarchical Meta-clustering of Cell-clusters in the...

meta.ME: immunoClust EM(t)-iteration on Cell-clusters

meta.normalize: immunoClust normalization step with the meta.clustering...

meta.plot: Ploting of immunoClust Meta-clustering Results

meta.process: Meta-clustering of Cell-clusters in the immunoClust-pipeline

meta.regnorm: immunoClust normalization procedure

meta.SubClustering: immunoClust Model Refinement Step in iterative...

plot.immunoClust: Scatterplot of immunoClust Clustering Results

splom.immunoClust: Scatterplot Matrix of immunoClust Clustering Results

trans.ApplyToData: immunoClust asinh-Transformation

trans.FitToData: immunoClust asinh-Transformation Optimization

Functions

cell.Classify Man page
cell.classifyAll Man page
cell.ClustData Man page
cell.EM Man page
cell.Estimation Man page
cell.FitModel Man page
cell.hclust Man page
cell.InitialModel Man page
cell.MajorIterationLoop Man page
cell.MajorIterationTrans Man page
cell.ME Man page
cell.process Man page
cell.SubClustering Man page
cell.TestSubCluster Man page
dat.exp Man page
dat.fcs Man page
dat.meta Man page
datSplom Man page
immunoClust Man page
immunoClust-class Man page
immunoClust.object Man page
immunoClust-package Man page
immunoClust.package Man page
meta.Clustering Man page
meta.export Man page
meta.exprs Man page
meta.freqTable Man page
meta.hclust Man page
meta.majorEvents Man page
meta.ME Man page
meta.Normalize Man page
meta.numClusters Man page
meta.numEvents Man page
meta.parMFI Man page
meta.plotClusters Man page
meta.plotClustersForScatter Man page
meta.plotExpClusters Man page
meta.plotExpResult Man page
meta.plotGate Man page
meta.plotGating Man page
meta.plotScatter Man page
meta.process Man page
meta.RegNorm Man page
meta.relEvents Man page
meta.relEvents2 Man page
meta.relEvents3 Man page
meta.SubClustering Man page
meta.TestSubCluster Man page
plot Man page
plot.immunoClust Man page
plot.immunoClust Man page
plot,immunoClust-method Man page
plot,immunoClust,missing-method Man page
removed.above Man page
removed.below Man page
show Man page
show.immunoClust Man page
show,immunoClust-method Man page
splom Man page
splom.immunoClust Man page
splom,immunoClust,flowFrame-method Man page
splom,immunoClust,matrix-method Man page
splom,immunoClust,missing-method Man page
summary Man page
summary.immunoClust Man page
summary,immunoClust-method Man page
trans.ApplyToData Man page
trans.FitToData Man page

Files

immunoClust/DESCRIPTION
immunoClust/NAMESPACE
immunoClust/NEWS
immunoClust/R
immunoClust/R/cell.clustering.R immunoClust/R/class.immunoClust.R immunoClust/R/clust.util.R immunoClust/R/data.R immunoClust/R/meta.clustering.R immunoClust/R/meta.export.R immunoClust/R/meta.gating.R immunoClust/R/meta.plot.R immunoClust/R/plot.immunoClust.R immunoClust/R/process.R immunoClust/R/splom.immunoClust.R immunoClust/R/transform.R
immunoClust/a.out.dSYM
immunoClust/a.out.dSYM/Contents
immunoClust/a.out.dSYM/Contents/Info.plist
immunoClust/a.out.dSYM/Contents/Resources
immunoClust/a.out.dSYM/Contents/Resources/DWARF
immunoClust/a.out.dSYM/Contents/Resources/DWARF/a.out
immunoClust/aclocal.m4
immunoClust/build
immunoClust/build/vignette.rds
immunoClust/cleanup
immunoClust/configure
immunoClust/configure.ac
immunoClust/data
immunoClust/data/dat.exp.RData
immunoClust/data/dat.fcs.RData
immunoClust/data/dat.meta.RData
immunoClust/inst
immunoClust/inst/doc
immunoClust/inst/doc/immunoClust.R
immunoClust/inst/doc/immunoClust.Rnw
immunoClust/inst/doc/immunoClust.pdf
immunoClust/man
immunoClust/man/cell.ClustData.Rd immunoClust/man/cell.EM.Rd immunoClust/man/cell.FitModel.Rd immunoClust/man/cell.ME.Rd immunoClust/man/cell.SubClustering.Rd immunoClust/man/cell.hclust.Rd immunoClust/man/cell.process.Rd immunoClust/man/cell.removed.Rd immunoClust/man/dat.exp.Rd immunoClust/man/dat.fcs.Rd immunoClust/man/dat.meta.Rd immunoClust/man/immunoClust-package.Rd immunoClust/man/immunoClust.object.Rd immunoClust/man/meta.ME.Rd immunoClust/man/meta.SubClustering.Rd immunoClust/man/meta.clustering.Rd immunoClust/man/meta.export.Rd immunoClust/man/meta.exprs.Rd immunoClust/man/meta.hclust.Rd immunoClust/man/meta.normalize.Rd immunoClust/man/meta.plot.Rd immunoClust/man/meta.process.Rd immunoClust/man/meta.regnorm.Rd immunoClust/man/plot.immunoClust.Rd immunoClust/man/splom.immunoClust.Rd immunoClust/man/trans.ApplyToData.Rd immunoClust/man/trans.FitToData.Rd
immunoClust/src
immunoClust/src/Makevars.in
immunoClust/src/Makevars.win
immunoClust/src/R_meta.cpp
immunoClust/src/R_model.cpp
immunoClust/src/dist_mvn.cpp
immunoClust/src/dist_mvn.h
immunoClust/src/em_meta.cpp
immunoClust/src/em_meta.h
immunoClust/src/em_mvn.cpp
immunoClust/src/em_mvn.h
immunoClust/src/em_mvt.cpp
immunoClust/src/em_mvt.h
immunoClust/src/hc_meta.cpp
immunoClust/src/hc_meta.h
immunoClust/src/hc_mvn.cpp
immunoClust/src/hc_mvn.h
immunoClust/src/immunoClust.c
immunoClust/src/immunoClust.h
immunoClust/src/meta_gpa.cpp
immunoClust/src/meta_gpa.h
immunoClust/src/meta_norm.cpp
immunoClust/src/meta_norm.h
immunoClust/src/meta_scale.cpp
immunoClust/src/meta_scale.h
immunoClust/src/normalize.cpp
immunoClust/src/normalize.h
immunoClust/src/sub_mvn.cpp
immunoClust/src/sub_mvn.h
immunoClust/src/util.cpp
immunoClust/src/util.h
immunoClust/src/vs_htrans.cpp
immunoClust/src/vs_htrans.h
immunoClust/vignettes
immunoClust/vignettes/immunoClust.Rnw

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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