immunoClust: immunoClust - Automated Pipeline for Population Detection in Flow Cytometry

Model based clustering and meta-clustering of Flow Cytometry Data

AuthorTill Soerensen <till-antoni.soerensen@charite.de>
Date of publicationNone
MaintainerTill Soerensen <till-antoni.soerensen@charite.de>
LicenseArtistic-2.0
Version1.6.0

View on Bioconductor

Man pages

cell.ClustData: Model Based Clustering of Data for a pre-defined Number of...

cell.EM: immunoClust EMt-iteration on Cell-events given initial Model...

cell.FitModel: immunoClust EMt-iteration on Cell-events given initial Model...

cell.hclust: Hierarchical Model Based Clustering of Cell-events in the...

cell.ME: immunoClust EM-iteration on Cell-events given initial Cluster...

cell.process: Clustering of Cell-events in the immunoClust-pipeline

cell.removed: Brief Information of removed Cell-events by immunoClust...

cell.SubClustering: immunoClust Model Refinement Step in iterative Cell-events...

dat.exp: immunoClust Meta-clustering Sample

dat.fcs: immunoClust Cell-clustering Sample

dat.meta: immunoClust Meta-clustering Results Sample

immunoClust.object: immunoClust-Object

immunoClust-package: immunoClust - Automated Pipeline for Population Detection in...

meta.clustering: Clustering of Cell-clusters in the immunoClust-pipeline

meta.export: immunoClust Meta-clustering Results Export

meta.exprs: Collecting Data of an immunoClust vector

meta.hclust: Hierarchical Meta-clustering of Cell-clusters in the...

meta.ME: immunoClust EM(t)-iteration on Cell-clusters

meta.normalize: immunoClust normalization step with the meta.clustering...

meta.plot: Ploting of immunoClust Meta-clustering Results

meta.process: Meta-clustering of Cell-clusters in the immunoClust-pipeline

meta.regnorm: immunoClust normalization procedure

meta.SubClustering: immunoClust Model Refinement Step in iterative...

plot.immunoClust: Scatterplot of immunoClust Clustering Results

splom.immunoClust: Scatterplot Matrix of immunoClust Clustering Results

trans.ApplyToData: immunoClust asinh-Transformation

trans.FitToData: immunoClust asinh-Transformation Optimization

Files in this package

immunoClust/DESCRIPTION
immunoClust/NAMESPACE
immunoClust/NEWS
immunoClust/R
immunoClust/R/cell.clustering.R immunoClust/R/class.immunoClust.R immunoClust/R/clust.util.R immunoClust/R/data.R immunoClust/R/meta.clustering.R immunoClust/R/meta.export.R immunoClust/R/meta.gating.R immunoClust/R/meta.plot.R immunoClust/R/plot.immunoClust.R immunoClust/R/process.R immunoClust/R/splom.immunoClust.R immunoClust/R/transform.R
immunoClust/a.out.dSYM
immunoClust/a.out.dSYM/Contents
immunoClust/a.out.dSYM/Contents/Info.plist
immunoClust/a.out.dSYM/Contents/Resources
immunoClust/a.out.dSYM/Contents/Resources/DWARF
immunoClust/a.out.dSYM/Contents/Resources/DWARF/a.out
immunoClust/aclocal.m4
immunoClust/build
immunoClust/build/vignette.rds
immunoClust/cleanup
immunoClust/configure
immunoClust/configure.ac
immunoClust/data
immunoClust/data/dat.exp.RData
immunoClust/data/dat.fcs.RData
immunoClust/data/dat.meta.RData
immunoClust/inst
immunoClust/inst/doc
immunoClust/inst/doc/immunoClust.R
immunoClust/inst/doc/immunoClust.Rnw
immunoClust/inst/doc/immunoClust.pdf
immunoClust/man
immunoClust/man/cell.ClustData.Rd immunoClust/man/cell.EM.Rd immunoClust/man/cell.FitModel.Rd immunoClust/man/cell.ME.Rd immunoClust/man/cell.SubClustering.Rd immunoClust/man/cell.hclust.Rd immunoClust/man/cell.process.Rd immunoClust/man/cell.removed.Rd immunoClust/man/dat.exp.Rd immunoClust/man/dat.fcs.Rd immunoClust/man/dat.meta.Rd immunoClust/man/immunoClust-package.Rd immunoClust/man/immunoClust.object.Rd immunoClust/man/meta.ME.Rd immunoClust/man/meta.SubClustering.Rd immunoClust/man/meta.clustering.Rd immunoClust/man/meta.export.Rd immunoClust/man/meta.exprs.Rd immunoClust/man/meta.hclust.Rd immunoClust/man/meta.normalize.Rd immunoClust/man/meta.plot.Rd immunoClust/man/meta.process.Rd immunoClust/man/meta.regnorm.Rd immunoClust/man/plot.immunoClust.Rd immunoClust/man/splom.immunoClust.Rd immunoClust/man/trans.ApplyToData.Rd immunoClust/man/trans.FitToData.Rd
immunoClust/src
immunoClust/src/Makevars.in
immunoClust/src/Makevars.win
immunoClust/src/R_meta.cpp
immunoClust/src/R_model.cpp
immunoClust/src/dist_mvn.cpp
immunoClust/src/dist_mvn.h
immunoClust/src/em_meta.cpp
immunoClust/src/em_meta.h
immunoClust/src/em_mvn.cpp
immunoClust/src/em_mvn.h
immunoClust/src/em_mvt.cpp
immunoClust/src/em_mvt.h
immunoClust/src/hc_meta.cpp
immunoClust/src/hc_meta.h
immunoClust/src/hc_mvn.cpp
immunoClust/src/hc_mvn.h
immunoClust/src/immunoClust.c
immunoClust/src/immunoClust.h
immunoClust/src/meta_gpa.cpp
immunoClust/src/meta_gpa.h
immunoClust/src/meta_norm.cpp
immunoClust/src/meta_norm.h
immunoClust/src/meta_scale.cpp
immunoClust/src/meta_scale.h
immunoClust/src/normalize.cpp
immunoClust/src/normalize.h
immunoClust/src/sub_mvn.cpp
immunoClust/src/sub_mvn.h
immunoClust/src/util.cpp
immunoClust/src/util.h
immunoClust/src/vs_htrans.cpp
immunoClust/src/vs_htrans.h
immunoClust/vignettes
immunoClust/vignettes/immunoClust.Rnw

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