flowAI: Automatic and interactive quality control for flow cytometry data
Version 1.4.1

The package is able to perform an automatic or interactive quality control on FCS data acquired using flow cytometry instruments. By evaluating three different properties: 1) flow rate, 2) signal acquisition, 3) dynamic range, the quality control enables the detection and removal of anomalies.

AuthorGianni Monaco, Hao Chen
Bioconductor views BiomedicalInformatics FlowCytometry QualityControl
Date of publicationNone
MaintainerGianni Monaco <gianni@liverpool.ac.uk>
LicenseGPL
Version1.4.1
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("flowAI")

Getting started

flowAI"

Popular man pages

Bcells: flowSet of B cells.
flow_auto_qc: Automatic quality control of flow cytometry data.
flow_iQC: Interactive quality control of Flow Cytometry Data
See all...

All man pages Function index File listing

Man pages

Bcells: flowSet of B cells.
flow_auto_qc: Automatic quality control of flow cytometry data.
flow_iQC: Interactive quality control of Flow Cytometry Data

Functions

Abuild Source code
Bcells Man page
Bge Source code
addQC Source code
anomaly_detection Source code
cffilter Source code
findTimeChannel Source code
fliplr Source code
flipud Source code
flow_auto_qc Man page Source code
flow_iQC Man page Source code
flow_margin_check Source code
flow_margin_plot Source code
flow_rate_bin Source code
flow_rate_check Source code
flow_rate_plot Source code
flow_set_plot Source code
flow_set_qc Source code
flow_signal_bin Source code
flow_signal_check Source code
flow_signal_plot Source code
ord_fcs_time Source code
strip.sep Source code
undrift Source code

Files

DESCRIPTION
NAMESPACE
R
R/anomaly-detection.R
R/auto-qc.R
R/cffilter.R
R/data.R
R/flow-rate.R
R/flow-set.R
R/margins.R
R/shiny.R
R/signal.R
R/support-qc.R
build
build/vignette.rds
data
data/Bcells.rda
data/datalist
inst
inst/NEWS
inst/doc
inst/doc/flowAI.R
inst/doc/flowAI.Rmd
inst/doc/flowAI.html
inst/rmd
inst/rmd/autoQC_report.Rmd
inst/shiny
inst/shiny/global.R
inst/shiny/server.R
inst/shiny/ui.R
man
man/Bcells.Rd
man/flow_auto_qc.Rd
man/flow_iQC.Rd
vignettes
vignettes/autoflowrate.png
vignettes/autosignal.png
vignettes/flowAI.Rmd
vignettes/hist_set.png
vignettes/iQCrate.png
vignettes/margins.png
flowAI documentation built on May 25, 2017, 2:03 a.m.

Questions? Problems? Suggestions? Tweet to @rdrrHQ or email at ian@mutexlabs.com.

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