Biocview "BiomedicalInformatics"

Accelerated similarity searching of small molecules
Accelerated similarity searching of small molecules
Accelerated similarity searching of small molecules
Accelerated similarity searching of small molecules
Analysis of Brain Imaging Data
Analytical R tools for Mass Spectrometry
Analytical R tools for Mass Spectrometry
Analyze comorbidities from electronic health record data
Ancestry Specific Allele Frequency Estimation
Ancestry Specific Allele Frequency Estimation
Ancestry Specific Allele Frequency Estimation
An R interface for computational modeling of tumor progression
An R interface for computational modeling of tumor progression
An R interface for computational modeling of tumor progression
An R package for quantitative integration and analysis of multiple omics assays from heterogeneous samples
An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)
An R package to Identify, Annotate and Visualize Alternative Splicing and Isoform Switches with Functional Consequences (from RNA-seq data)
An R package to Identify, Annotate and Visualize Isoform Switches with Functional Consequences (from RNA-seq data)
Application of gene classifiers
Application of gene classifiers
Application of gene classifiers
Assign Properties to TNBC Patients
Assign Properties to TNBC Patients
Assign Properties to TNBC Patients
A tool to identify potentially oncogenic genes
A tool to identify potentially oncogenic genes
A tool to identify potentially oncogenic genes
Automatic and interactive quality control for flow cytometry data
Automatic and interactive quality control for flow cytometry data
Cancer Variant Explorer
Cancer Variant Explorer
Cancer Variant Explorer
Cell birth and death rates estimation
Cheminformatics Toolkit for R
Cheminformatics Toolkit for R
Cheminformatics Toolkit for R
Cheminformatics Toolkit for R
Cheminformatics Toolkit for R
Clustering of Genomic Regions Analysis Method
Clustering of Genomic Regions Analysis Method
cytofkit: an integrated mass cytometry data analysis pipeline
cytofkit: an integrated mass cytometry data analysis pipeline
cytofkit: an integrated mass cytometry data analysis pipeline
cytofkit: an integrated mass cytometry data analysis pipeline
Decomposing Heterogeneous Cohorts using Omic Data Profiling
Decomposition of individual tumors into mutational signatures by signature refitting
Detection of clonally exclusive gene or pathway pairs in a cohort of cancer patients
Exposome exploration and outcome data analysis
Exposome exploration and outcome data analysis
Exposome exploration and outcome data analysis
Expression Weighted Celltype Enrichment
Expression Weighted Celltype Enrichment
Expression Weighted Celltype Enrichment
Functions for Cytoscape Automation
Generating Various Molecular Representations for Chemicals, Proteins, DNAs/RNAs and Their Interactions
Generating Various Molecular Representations for Chemicals, Proteins, DNAs/RNAs and Their Interactions
Generating Various Molecular Representations for Chemicals, Proteins, DNAs/RNAs and Their Interactions
Graphical Interface for Alternative Splicing Quantification, Analysis and Visualisation
Graphical Interface for Alternative Splicing Quantification, Analysis and Visualisation
Graphical Interface for Alternative Splicing Quantification, Analysis and Visualisation
gwasurvivr: an R package for genome wide survival analysis
gwasurvivr: an R package for genome wide survival analysis
Identification and analysis of miRNA sponge interaction networks and modules
Identification and analysis of miRNA sponge interaction networks and modules
Inference and visualisation of Single-Cell RNA-seq data as a hierarchical tree structure
Inference and visualisation of Single-Cell RNA-seq data as a hierarchical tree structure
Inference and visualisation of Single-Cell RNA-seq data as a hierarchical tree structure
Inferring miRNA sponge modules by integrating expression data and miRNA-target binding information
Infers biological signatures from gene expression data
Infers biological signatures from gene expression data
Interact with the Broad Institute Cromwell workflow manager
Interact with the Broad Institute Cromwell workflow manager
MAGMA.Celltyping
Mismatch Tolerant Maximum Common Substructure Searching
Mismatch Tolerant Maximum Common Substructure Searching
Mismatch Tolerant Maximum Common Substructure Searching
Model-Based Comparative Analysis of the TCR Repertoire
Model-Based Comparative Analysis of the TCR Repertoire
Molecular Degree of Perturbation calculates scores for transcriptome data samples based on their perturbation from controls
Molecular Degree of Perturbation calculates scores for transcriptome data samples based on their perturbation from controls
Molecular Degree of Perturbation calculates scores for transcriptome data samples based on their perturbation from controls
Molecular Informatics Toolkit for Compound-Protein Interaction in Drug Discovery
Molecular Informatics Toolkit for Compound-Protein Interaction in Drug Discovery
Molecular Informatics Toolkit for Compound-Protein Interaction in Drug Discovery
MulEA - A Tool for Multi Enrichment Analysis
NutrienTrackeR: an R package for food-based assessment of dietary intake
Optimal p-value weighting with independent information
Optimal p-value weighting with independent information
Optimal p-value weighting with independent information
Package for CTDbase data query, visualization and downstream analysis
Package for CTDbase data query, visualization and downstream analysis
PatchseqMap
Patient Clonal Timescapes
Prediction of gestational age with Illumina HumanMethylation450 data
Prediction of gestational age with Illumina HumanMethylation450 data
Prediction of gestational age with Illumina HumanMethylation450 data
Prediction of gestational age with Illumina HumanMethylation450 data
psygenet2r - An R package for querying PsyGeNET and to perform comorbidity studies in psychiatric disorders
psygenet2r - An R package for querying PsyGeNET and to perform comorbidity studies in psychiatric disorders
psygenet2r - An R package for querying PsyGeNET and to perform comorbidity studies in psychiatric disorders
Random walk with restart on multiplex and heterogeneous Networks
Random walk with restart on multiplex and heterogeneous Networks
RImmPort: Enabling Ready-for-analysis Immunology Research Data
RImmPort: Enabling Ready-for-analysis Immunology Research Data
RImmPort: Enabling Ready-for-analysis Immunology Research Data
RImmPort: Enabling Ready-for-analysis Immunology Research Data
R interface to a subset of OpenBabel functionalities
R interface to a subset of OpenBabel functionalities
R interface to a subset of OpenBabel functionalities
R package for RIVER (RNA-Informed Variant Effect on Regulation)
R package for RIVER (RNA-Informed Variant Effect on Regulation)
R package for RIVER (RNA-Informed Variant Effect on Regulation)
R package for RIVER (RNA-Informed Variant Effect on Regulation)
R package for the statistical assessment of cell state hierarchies from single-cell RNA-seq data
R package for the statistical assessment of cell state hierarchies from single-cell RNA-seq data
Significance Analysis of Prognostic Signatures
Significance Analysis of Prognostic Signatures
Significance Analysis of Prognostic Signatures
Single-gene classifiers and outlier-resistant detection of differential expression for two-group and survival problems.
Single-gene classifiers and outlier-resistant detection of differential expression for two-group and survival problems.
SparseSignatures
SparseSignatures
Suite of Functions for Pooled Crispr Screen QC and Analysis
Suite of Functions for Pooled Crispr Screen QC and Analysis
Suite of Functions for Pooled Crispr Screen QC and Analysis
TRONCO, an R package for TRanslational ONCOlogy
TRONCO, an R package for TRanslational ONCOlogy
TRONCO, an R package for TRanslational ONCOlogy