Biocview "BiomedicalInformatics"

Accelerated similarity searching of small molecules
Accelerated similarity searching of small molecules
Accelerated similarity searching of small molecules
Analysis of Brain Imaging Data
Analytical R tools for Mass Spectrometry
Analytical R tools for Mass Spectrometry
Analytical R tools for Mass Spectrometry
Analyze comorbidities from electronic health record data
Ancestry Specific Allele Frequency Estimation
Ancestry Specific Allele Frequency Estimation
An R interface for computational modeling of tumor progression
An R interface for computational modeling of tumor progression
An R package for quantitative integration and analysis of multiple omics assays from heterogeneous samples
An R package for quantitative integration and analysis of multiple omics assays from heterogeneous samples
An R package for the analysis and result reporting of RNA-Seq data by combining multiple statistical algorithms
An R package for the analysis and result reporting of RNA-Seq data by combining multiple statistical algorithms
An R package for the analysis and result reporting of RNA-Seq data by combining multiple statistical algorithms
Application of gene classifiers
Application of gene classifiers
Assign Properties to TNBC Patients
Assign Properties to TNBC Patients
A tool for differential expression analysis and DEGs based investigation to complex diseases by bi-clustering analysis
A tool to identify potentially oncogenic genes
A tool to identify potentially oncogenic genes
Automated functions for comparing various omic data from cbioportal.org
Automated functions for comparing various omic data from cbioportal.org
Automated functions for comparing various omic data from cbioportal.org
Automatic and interactive quality control for flow cytometry data
Automatic and interactive quality control for flow cytometry data
Automatic and interactive quality control for flow cytometry data
Automatic calculation of literature relevance of genes
Automatic calculation of literature relevance of genes
Automatic calculation of literature relevance of genes
Automatic calculation of literature relevance of genes
Cancer Variant Explorer
Cancer Variant Explorer
Cell birth and death rates estimation
Cheminformatics Toolkit for R
Cheminformatics Toolkit for R
Cheminformatics Toolkit for R
Cheminformatics Toolkit for R
Clustering of Genomic Regions Analysis Method
Clustering of Genomic Regions Analysis Method
Codon Usage Analysis and Prediction of Gene Expressivity
Codon Usage Analysis and Prediction of Gene Expressivity
cytofkit: an integrated mass cytometry data analysis pipeline
cytofkit: an integrated mass cytometry data analysis pipeline
cytofkit: an integrated mass cytometry data analysis pipeline
Decomposing Heterogeneous Cohorts using Omic Data Profiling
Decomposing Heterogeneous Cohorts using Omic Data Profiling
Decomposition of individual tumors into mutational signatures by signature refitting
Decomposition of individual tumors into mutational signatures by signature refitting
Delineate outstanding genomic zones of differential gene activity
Delineate outstanding genomic zones of differential gene activity
Detection of clonally exclusive gene or pathway pairs in a cohort of cancer patients
Detection of clonally exclusive gene or pathway pairs in a cohort of cancer patients
Differential Expression Analysis for RNA-seq data through a robust variance component test
Dual redundant reference sequencing
Empirical Analysis of Digital Gene Expression Data in R
Exposome exploration and outcome data analysis
Exposome exploration and outcome data analysis
Expression Weighted Celltype Enrichment
Expression Weighted Celltype Enrichment
Functions for Cytoscape Automation
Generating Various Molecular Representations for Chemicals, Proteins, DNAs, RNAs and Their Interactions
Generating Various Molecular Representations for Chemicals, Proteins, DNAs, RNAs and Their Interactions
Generating Various Molecular Representations for Chemicals, Proteins, DNAs/RNAs and Their Interactions
Graphical Interface for Alternative Splicing Quantification, Analysis and Visualisation
Graphical Interface for Alternative Splicing Quantification, Analysis and Visualisation
gwasurvivr: an R package for genome wide survival analysis
gwasurvivr: an R package for genome wide survival analysis
gwasurvivr: an R package for genome wide survival analysis
Identification and analysis of miRNA sponge interaction networks and modules
Identification and analysis of miRNA sponge interaction networks and modules
Identification and analysis of miRNA sponge interaction networks and modules
Identification and analysis of miRNA sponge interaction networks and modules
Identify, Annotate and Visualize Alternative Splicing and Isoform Switches with Functional Consequences from both short- and long-read RNA-seq data.
Identify, Annotate and Visualize Alternative Splicing and Isoform Switches with Functional Consequences from both short- and long-read RNA-seq data.
immune Cell Analysis Tool
immune Cell Analysis Tool
Inference and visualisation of Single-Cell RNA-seq data as a hierarchical tree structure
Inferring miRNA sponge modules by integrating expression data and miRNA-target binding information
Inferring miRNA sponge modules by integrating expression data and miRNA-target binding information
Infers biological signatures from gene expression data
In-silico methods for finemapping of genetic regions in inbred mice
In-silico methods for finemapping of genetic regions in inbred mice
Interact with the Broad Institute Cromwell workflow manager
Interact with the Broad Institute Cromwell workflow manager
Linear Models for Microarray Data
Longitudinal Analysis of Cancer Evolution (LACE)
Longitudinal Analysis of Cancer Evolution (LACE)
MAGMA.Celltyping
Mismatch Tolerant Maximum Common Substructure Searching
Mismatch Tolerant Maximum Common Substructure Searching
Model-Based Comparative Analysis of the TCR Repertoire
Model-Based Comparative Analysis of the TCR Repertoire
Molecular Degree of Perturbation calculates scores for transcriptome data samples based on their perturbation from controls
Molecular Degree of Perturbation calculates scores for transcriptome data samples based on their perturbation from controls
Molecular Degree of Perturbation calculates scores for transcriptome data samples based on their perturbation from controls
Molecular Informatics Toolkit for Compound-Protein Interaction in Drug Discovery
Molecular Informatics Toolkit for Compound-Protein Interaction in Drug Discovery
Molecular Informatics Toolkit for Compound-Protein Interaction in Drug Discovery
MulEA - A Tool for Multi Enrichment Analysis
Muscle Epigenetic Age Test
Network Analysis Supported by Boosting
Network-based patient classifier
Network-based patient classifier
NutrienTrackeR: an R package for food-based assessment of dietary intake
Optimal p-value weighting with independent information
Optimal p-value weighting with independent information
Outlier Protein and Phosphosite Target Identifier
Outlier Protein and Phosphosite Target Identifier
Package for CTDbase data query, visualization and downstream analysis
Package for CTDbase data query, visualization and downstream analysis
PatchseqMap
Patient Clonal Timescapes
Poisson Models for Quantifying DNA Copy-number from FISH Images of Tissue Sections
Poisson Models for Quantifying DNA Copy-number from FISH Images of Tissue Sections
Prediction of gestational age with Illumina HumanMethylation450 data
Prediction of gestational age with Illumina HumanMethylation450 data
Prediction of gestational age with Illumina HumanMethylation450 data
psygenet2r - An R package for querying PsyGeNET and to perform comorbidity studies in psychiatric disorders
psygenet2r - An R package for querying PsyGeNET and to perform comorbidity studies in psychiatric disorders
Random Rotation Methods for High Dimensional Data with Batch Structure
Random Rotation Methods for High Dimensional Data with Batch Structure
Random walk with restart on multiplex and heterogeneous Networks
Random walk with restart on multiplex and heterogeneous Networks
Reposition Drugs to Target Genes
REST API Client for the NHGRI-EBI GWAS Catalog
RImmPort: Enabling Ready-for-analysis Immunology Research Data
RImmPort: Enabling Ready-for-analysis Immunology Research Data
RImmPort: Enabling Ready-for-analysis Immunology Research Data
R interface to a subset of OpenBabel functionalities
R interface to a subset of OpenBabel functionalities
R Interface to MELTING 5
R Interface to MELTING 5
R package for RIVER (RNA-Informed Variant Effect on Regulation)
R package for RIVER (RNA-Informed Variant Effect on Regulation)
R package for RIVER (RNA-Informed Variant Effect on Regulation)
R package for the statistical assessment of cell state hierarchies from single-cell RNA-seq data
scRMD: Imputation for single cell RNA-seq data via robust matrix decomposition
scRMD: Imputation for single cell RNA-seq data via robust matrix decomposition
Signature-based Clustering for Diagnostic Purposes
Signature-based Clustering for Diagnostic Purposes
Signature-based Clustering for Diagnostic Purposes
Significance Analysis of Prognostic Signatures
Significance Analysis of Prognostic Signatures
Single-gene classifiers and outlier-resistant detection of differential expression for two-group and survival problems
Skeleton for library based on R6 class(es)
SparseSignatures
SparseSignatures
ssPATHS: Single Sample PATHway Score
ssPATHS: Single Sample PATHway Score
Suite of Functions for Pooled Crispr Screen QC and Analysis
Suite of Functions for Pooled Crispr Screen QC and Analysis
Suite of Functions for Pooled Crispr Screen QC and Analysis
TRONCO, an R package for TRanslational ONCOlogy
TRONCO, an R package for TRanslational ONCOlogy