decompTumor2Sig: Decomposition of individual tumors into mutational signatures by signature refitting

Uses quadratic programming for signature refitting, i.e., to decompose the mutation catalog from an individual tumor sample into a set of given mutational signatures (either Alexandrov-model signatures or Shiraishi-model signatures), computing weights that reflect the contributions of the signatures to the mutation load of the tumor.

Package details

AuthorRosario M. Piro [aut, cre], Sandra Krueger [ctb]
Bioconductor views BiologicalQuestion BiomedicalInformatics DNASeq Genetics GenomicVariation SNP Sequencing Software SomaticMutation StatisticalMethod
MaintainerRosario M. Piro <[email protected]>
LicenseGPL-2
Version2.2.0
URL http://rmpiro.net/decompTumor2Sig/ https://github.com/rmpiro/decompTumor2Sig
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("decompTumor2Sig")

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decompTumor2Sig documentation built on Oct. 31, 2019, 3:21 a.m.