isShiraishiSet: isShiraishiSet

Description Usage Arguments Value Author(s) References See Also Examples

View source: R/helper_functions_for_class_checks.R

Description

'isShiraishiSet()' checks whether the input object is a set (list) of numeric objects compatible with the Shiraishi format (matrices or data.frames of probabilities; 6 columns, each row sums up to 1). NOTE: These can also be genomes compatible with the Shiraishi format!

Usage

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Arguments

x

Object to be checked.

Value

Logical value (true or false).

Author(s)

Rosario M. Piro
Politecnico di Milano
Maintainer: Rosario M. Piro
E-Mail: <rmpiro@gmail.com> or <rosariomichael.piro@polimi.it>

References

http://rmpiro.net/decompTumor2Sig/
Krueger, Piro (2019) decompTumor2Sig: Identification of mutational signatures active in individual tumors. BMC Bioinformatics 20(Suppl 4):152.

See Also

decompTumor2Sig
isSignatureSet
readShiraishiSignatures

Examples

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### get Alexandrov signatures from COSMIC
signAlexandrov <- readAlexandrovSignatures()

### convert them to the Shiraishi model
signShiraishi <- convertAlexandrov2Shiraishi(signAlexandrov)

isShiraishiSet(signShiraishi)

decompTumor2Sig documentation built on Nov. 8, 2020, 8:23 p.m.