API for decompTumor2Sig
Decomposition of individual tumors into mutational signatures by signature refitting

Global functions
.onAttach Source code
QPforSig Man page Source code
addBestSignatureToSubset Man page Source code
buildGenomesFromMutationData Man page Source code
buildSortedAlexandrovSignaturePatternList Man page Source code
composeGenomesFromExposures Man page Source code
computeExplainedVariance Man page Source code
computeFrobeniusNorm Man page Source code
computeRSS Man page Source code
convAlx2Shi Man page Source code
convertAlexandrov2Shiraishi Man page Source code
convertGenomesFromVRanges Man page Source code
decompTumor2Sig Man page
decompTumor2Sig-package Man page
decomposeTumorGenomes Man page Source code
determineSignatureDistances Man page Source code
determineTypeNumBasesAndTrDir Man page Source code
downgradeShiraishiSignatures Man page Source code
evaluateDecompositionQuality Man page Source code
getBestDecomp4Ksignatures Man page Source code
getCountData Man page Source code
getFeatVectList Man page Source code
getGenomesFromMutFeatData Man page Source code
getNumFlankingBases Man page Source code
getNumSignatures Man page Source code
getSampleList Man page Source code
getSigFeatDist Man page Source code
getSigFromEstParam Man page Source code
getSigType Man page Source code
getSignaturesFromEstParam Man page Source code
haveTrDir Man page Source code
is.probability.data.frame Man page Source code
is.probability.data.frame.list Man page Source code
is.probability.matrix Man page Source code
is.probability.matrix.list Man page Source code
is.probability.object Man page Source code
is.probability.vector Man page Source code
is.probability.vector.list Man page Source code
isAlexandrovSet Man page Source code
isBackGround Man page Source code
isEstParamObject Man page Source code
isExposureSet Man page Source code
isMutFeatDataObject Man page Source code
isShiraishiSet Man page Source code
isSignatureSet Man page Source code
mapSignatureSets Man page Source code
plotAlexandrovModel Man page Source code
plotDecomposedContribution Man page Source code
plotExplainedVariance Man page Source code
plotMutationDistribution Man page Source code
plotShiraishiModel Man page Source code
processMultipleSigSets Man page Source code
readAlexandrovSignatures Man page Source code
readGenomesFromMPF Man page Source code
readGenomesFromVCF Man page Source code
readShiraishiSignatures Man page Source code
roundIntegerSum Man page Source code
sameSignatureFormat Man page Source code
setNames4ShiraishiTable Man page Source code
setNumFlankingBases Man page Source code
setSigFeatDist Man page Source code
setSigType Man page Source code
setTrDir Man page Source code
decompTumor2Sig documentation built on Oct. 31, 2019, 3:21 a.m.