isAlexandrovSet: isAlexandrovSet
In decompTumor2Sig: Decomposition of individual tumors into mutational signatures by signature refitting
Description
Usage
Arguments
Value
Author(s)
References
See Also
Examples
View source: R/helper_functions_for_class_checks.R
Description
'isAlexandrovSet()' checks whether the input object is a set (list) of
numeric objects compatible with the Alexandrov format (probability vectors;
sum up to 1). NOTE: These can also be genomes compatible with the
Alexandrov format!
Usage
1
Arguments
x
Object to be checked.
Value
Logical value (true or false).
Author(s)
Rosario M. Piro
Politecnico di Milano
Maintainer: Rosario
M. Piro
E-Mail: <rmpiro@gmail.com> or <rosariomichael.piro@polimi.it>
References
http://rmpiro.net/decompTumor2Sig/
Krueger, Piro (2019) decompTumor2Sig: Identification of mutational
signatures active in individual tumors. BMC Bioinformatics
20(Suppl 4):152.
See Also
decompTumor2Sig
readAlexandrovSignatures
isSignatureSet
Examples
1
2
3
4
### get Alexandrov signatures from COSMIC
signAlexandrov <- readAlexandrovSignatures()
isAlexandrovSet(signAlexandrov)
decompTumor2Sig documentation built on Nov. 8, 2020, 8:23 p.m.
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Description Usage Arguments Value Author(s) References See Also Examples
View source: R/helper_functions_for_class_checks.R
Description
'isAlexandrovSet()' checks whether the input object is a set (list) of numeric objects compatible with the Alexandrov format (probability vectors; sum up to 1). NOTE: These can also be genomes compatible with the Alexandrov format!
Usage
1 |
Arguments
x |
Object to be checked. |
Value
Logical value (true or false).
Author(s)
Rosario M. Piro
Politecnico di Milano
Maintainer: Rosario
M. Piro
E-Mail: <rmpiro@gmail.com> or <rosariomichael.piro@polimi.it>
References
http://rmpiro.net/decompTumor2Sig/
Krueger, Piro (2019) decompTumor2Sig: Identification of mutational
signatures active in individual tumors. BMC Bioinformatics
20(Suppl 4):152.
See Also
decompTumor2Sig
readAlexandrovSignatures
isSignatureSet
Examples
1 2 3 4 | ### get Alexandrov signatures from COSMIC
signAlexandrov <- readAlexandrovSignatures()
isAlexandrovSet(signAlexandrov)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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