Biocview "BiologicalQuestion"

Accurate Inference of Genetic Ancestry from Cancer Sequencing

An Implementation of Integrated Differential Expression and Differential Network Analysis for Biomarker Candidate Selection

An integrated analysis package of miRNA and mRNA expression data

annotation of noncoding RNAs and coexpressed genes

An R package for quantitative integration and analysis of multiple omics assays from heterogeneous samples

A package of creating an algorithm of identifying microRNA-competing endogenous RNA triplets

BASiNET - Classification of mRNA and lncRNA sequences using complex network theory

Bayesian hierarchical model for genome-wide nucleosome positioning with high-throughput short-read data (MNase-Seq)

Bayesian hierarchical model for genome-wide profiling of nucleosome positions based on high-throughput short-read data (MNase-Seq data)

Calculate, visualize and analyse overlap between genomic regions

ChIPanalyser: Predicting Transcription Factor Binding Sites

CIMICE-R: (Markov) Chain Method to Inferr Cancer Evolution

Classification of RNA Sequences using Complex Network and Information Theory

Classification of RNA Sequences using Complex Network Theory

co-expression of lincRNAs and protein-coding genes

Copy Number Variant Metrics

Decomposition of individual tumors into mutational signatures by signature refitting

Detection of consensus regions inside a group of experiences using genomic positions and genomic ranges

Differential RhythmicitY analysis

Exposome exploration and outcome data analysis

Fast Permutation-based Gene Set Analysis

Forward Genetic Simulation of Cancer Progression with Epistasis

From functional enrichment results to biological networks

Functions for Cytoscape Automation

Functions for the projection of weights from PCA, CoGAPS, NMF, correlation, and clustering

Generate Quality Surrogate Variable Analysis for Degradation Correction

Gene Set Enrichment Analysis Extended to Contingency Cubes

HLA typing clustering and visualization based on specific similarity metrics

Integrated Differential Expression and Differential Network Analysis (INDEED)

Interactive Visualization of Integrated Differential Expression and Differential Network Analysis for Biomarker Candidate Selection

Interactive Visualization of Integrated Differential Expression and Differential Network Analysis for Biomarker Candidate Selection Package

Long gene expression as a metric for neuronal identity

Metrics to estimate a level of similarity between two ChIP-Seq profiles

Mutational Signature Comprehensive Analysis Toolkit

Network-based prioritization of putative metabolite IDs

NoRCE: Noncoding RNA Sets Cis Annotation and Enrichment

Novel Mutational Signature Analysis

Permutation-Based Analysis associating Conserved Differentially Methylated Elements Across Multiple Generations to a Treatment Effect

Robust outlier identification for DNA methylation data

R package of gene set enrichment analysis

Set of tools to make V-plots and compute footprint profiles

Simulating Whole-Genome Inherited Bisulphite Sequencing Data

Test branch renaming

Test Single Package Builder

The Discordant Method: A Novel Approach for Differential Correlation

This Package Discovers Directionality in Time and Pseudo-times Series of Gene Expression Patterns

This Package Discovers Meso-scale Chromatin Remodeling from 3C Data

Transcription Factor High Accumulation Zones

Transcription Factors Association Rules Miner

tricycle: Transferable Representation and Inference of cell cycle

Visual comparison of mutational processes in a set of tumors

Yet Another Package for Signature Analysis

Biocview "BiologicalQuestion"

R Package Documentation

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