ManuelGoepferich/LINC_before_DEVEL: annotation of noncoding RNAs and coexpressed genes
Version 1.00.4

This package enables the annotation of ncRNAs based on expression datasets. The underlying principle is called 'guilty by association' meaning a non-coding RNA is assumed to the have the a similar biological function as the group of its associated (co-expressed) protein-coding genes. In the first step a correlation matrix is computed storing the correlation of coding and non-coding genes. Secondly, query genes and their associated genes with high correlations can be extracted. The third step calls a gene ontology to retrieve the biological function of associated genes.

Getting started

Package details

AuthorManuel Goepferich
Bioconductor views BiologicalQuestion GeneExpression GeneRegulation Software
MaintainerManuel Goepferich <[email protected]>
LicenseArtistic-2.0
Version1.00.4
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("ManuelGoepferich/LINC_before_DEVEL")
ManuelGoepferich/LINC_before_DEVEL documentation built on May 9, 2017, 8:32 a.m.