getlinc-methods: Subsetting for 'LINC' objects

Description Usage Arguments Value Methods Author(s) See Also Examples

Description

getlinc is a function to derive substructures from LINC objects.

Usage

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getlinc(input,
        subject = "queries")

Arguments

input

a 'LINC' object, for instance LINCmatrix

subject

has to be one of c("queries", "geneSystem", "results", "history", "customID")

Value

the respective substructure or infromation

Methods

signature(input = "ANY", subject = "character")

(see details)

Author(s)

Manuel Goepferich

See Also

linc ;

Examples

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data(BRAIN_EXPR)

# getlinc() is used to accesss information
getlinc(crbl_cluster, subject = "geneSystem")
getlinc(crbl_cluster, subject = "queries")
getlinc(crbl_cluster, subject = "customID")
str(crbl_matrix@assignment) # protein-coding genes are stored in the 'assignment' slot

# write to a table
#linctable(file_name = "crbl_co_expr", input = crbl_cluster)

ManuelGoepferich/LINC_before_DEVEL documentation built on May 7, 2019, 2:46 p.m.