similaRpeak: Metrics to estimate a level of similarity between two ChIP-Seq profiles

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This package calculates metrics which assign a level of similarity between ChIP-Seq profiles.

Author
Astrid Deschenes [cre, aut], Elsa Bernatchez [aut], Charles Joly Beauparlant [aut], Fabien Claude Lamaze [aut], Rawane Samb [aut], Pascal Belleau [aut], Arnaud Droit [aut]
Date of publication
None
Maintainer
Astrid Louise Deschenes <Astrid-Louise.Deschenes@crchudequebec.ulaval.ca>
License
Artistic-2.0
Version
1.6.0
URLs

View on Bioconductor

Man pages

chr7Profiles
ChIP-Seq profiles of region chr7:61968807-61969730 related to...
demoProfiles
Selected ChIP-seq profiles related to enhancers H3K27ac and...
MetricFactory
MetricFactory object
similarity
Calculate metrics which estimate the level of similarity...
similaRpeak-package
similaRpeak: Metrics to estimate a level of similarity...

Files in this package

similaRpeak/DESCRIPTION
similaRpeak/NAMESPACE
similaRpeak/NEWS
similaRpeak/R
similaRpeak/R/metrics.R
similaRpeak/R/metricsMethods.R
similaRpeak/R/similaRpeak.R
similaRpeak/README.md
similaRpeak/build
similaRpeak/build/vignette.rds
similaRpeak/data
similaRpeak/data/chr7Profiles.RData
similaRpeak/data/demoProfiles.RData
similaRpeak/inst
similaRpeak/inst/doc
similaRpeak/inst/doc/similaRpeak.R
similaRpeak/inst/doc/similaRpeak.Rmd
similaRpeak/inst/doc/similaRpeak.html
similaRpeak/inst/extdata
similaRpeak/inst/extdata/align1.bam
similaRpeak/inst/extdata/align1.bam.bai
similaRpeak/inst/extdata/list1.bed
similaRpeak/inst/unitTests
similaRpeak/inst/unitTests/Makefile
similaRpeak/inst/unitTests/test_metrics.R
similaRpeak/inst/unitTests/test_metricsMethods.R
similaRpeak/inst/unitTests/test_similaRpeak.R
similaRpeak/man
similaRpeak/man/MetricFactory.Rd
similaRpeak/man/chr7Profiles.Rd
similaRpeak/man/demoProfiles.Rd
similaRpeak/man/similaRpeak-package.Rd
similaRpeak/man/similarity.Rd
similaRpeak/tests
similaRpeak/tests/runTests.R
similaRpeak/vignettes
similaRpeak/vignettes/figure
similaRpeak/vignettes/metrics_small.gif
similaRpeak/vignettes/similaRpeak.Rmd