similaRpeak: Metrics to estimate a level of similarity between two ChIP-Seq profiles

This package calculates metrics which assign a level of similarity between ChIP-Seq profiles.

AuthorAstrid Deschenes [cre, aut], Elsa Bernatchez [aut], Charles Joly Beauparlant [aut], Fabien Claude Lamaze [aut], Rawane Samb [aut], Pascal Belleau [aut], Arnaud Droit [aut]
Date of publicationNone
MaintainerAstrid Louise Deschenes <Astrid-Louise.Deschenes@crchudequebec.ulaval.ca>
LicenseArtistic-2.0
Version1.6.0
https://github.com/adeschen/similaRpeak

View on Bioconductor

Files

similaRpeak/DESCRIPTION
similaRpeak/NAMESPACE
similaRpeak/NEWS
similaRpeak/R
similaRpeak/R/metrics.R similaRpeak/R/metricsMethods.R similaRpeak/R/similaRpeak.R
similaRpeak/README.md
similaRpeak/build
similaRpeak/build/vignette.rds
similaRpeak/data
similaRpeak/data/chr7Profiles.RData
similaRpeak/data/demoProfiles.RData
similaRpeak/inst
similaRpeak/inst/doc
similaRpeak/inst/doc/similaRpeak.R
similaRpeak/inst/doc/similaRpeak.Rmd
similaRpeak/inst/doc/similaRpeak.html
similaRpeak/inst/extdata
similaRpeak/inst/extdata/align1.bam
similaRpeak/inst/extdata/align1.bam.bai
similaRpeak/inst/extdata/list1.bed
similaRpeak/inst/unitTests
similaRpeak/inst/unitTests/Makefile
similaRpeak/inst/unitTests/test_metrics.R
similaRpeak/inst/unitTests/test_metricsMethods.R
similaRpeak/inst/unitTests/test_similaRpeak.R
similaRpeak/man
similaRpeak/man/MetricFactory.Rd similaRpeak/man/chr7Profiles.Rd similaRpeak/man/demoProfiles.Rd similaRpeak/man/similaRpeak-package.Rd similaRpeak/man/similarity.Rd
similaRpeak/tests
similaRpeak/tests/runTests.R
similaRpeak/vignettes
similaRpeak/vignettes/figure
similaRpeak/vignettes/metrics_small.gif
similaRpeak/vignettes/similaRpeak.Rmd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.