Files in similaRpeak

Metrics to estimate a level of similarity between two ChIP-Seq profiles

README.md

NEWS

NAMESPACE

DESCRIPTION

build/vignette.rds

data/chr7Profiles.RData

data/demoProfiles.RData

R/similaRpeakMethods.R R/metricsMethods.R R/similaRpeak.R R/metrics.R

vignettes/metrics_small.gif

vignettes/similaRpeak.Rmd man/RatioIntersect.Rd man/ratioIntersectMethod.Rd man/diffPosMaxMethod.Rd man/DiffPosMax.Rd man/SpearmanCorrelation.Rd man/Metric.Rd man/similaRpeak-package.Rd man/spearmanCorrMethod.Rd man/ratioMaxMaxMethod.Rd man/demoProfiles.Rd man/MetricFactory.Rd man/RatioNormalizedIntersect.Rd man/similarity.Rd man/RatioArea.Rd man/chr7Profiles.Rd man/ratioAreaMethod.Rd man/RatioMaxMax.Rd tests/runTests.R inst/doc/similaRpeak.R

inst/doc/similaRpeak.html

inst/doc/similaRpeak.Rmd

inst/extdata/align1.bam

inst/extdata/list1.bed

inst/extdata/align1.bam.bai

inst/unitTests/test_metricsMethods.R

inst/unitTests/Makefile

inst/unitTests/test_similaRpeak.R inst/unitTests/test_metrics.R

similaRpeak documentation built on Nov. 8, 2020, 6:56 p.m.