eilslabs/YAPSA: Yet Another Package for Signature Analysis

This package provides functions and routines useful in the analysis of somatic signatures (cf. L. Alexandrov et al., Nature 2013). In particular, functions to perform a signature analysis with known signatures (LCD = linear combination decomposition) and a signature analysis on stratified mutational catalogue (SMC = stratify mutational catalogue) are provided.

Getting started

Package details

AuthorDaniel Huebschmann, Zuguang Gu, Matthias Schlesner
Bioconductor views BiologicalQuestion Clustering DNASeq GenomicVariation Sequencing SomaticMutation StatisticalMethod Visualization
MaintainerDaniel Huebschmann <huebschmann.daniel@googlemail.com>
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
eilslabs/YAPSA documentation built on May 16, 2019, 1:23 a.m.