run_comparison_general: Compare all strata from different stratifications

Description Usage Arguments Value See Also Examples

Description

Compare all strata from different orthogonal stratification axes, i.e. othogonal SMCs by cosine similarity of signature exposures. Function similar to compare_SMCs, but without calling plot_strata. First calls

Usage

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run_comparison_general(in_stratification_lists_list, output_path = NULL,
  in_nrect = 5, in_attribute = "", in_remove_signature_ind = NULL,
  in_additional_stratum = NULL)

Arguments

in_stratification_lists_list

List of lists with entries from different (orthogonal) stratification axes or SMCs

output_path

Path to directory where the results, especially the figure produced by corrplot is going to be stored.

in_nrect

Number of clusters in the clustering procedure provided by corrplot

in_attribute

Additional string for the file name where the figure produced by corrplot is going to be stored.

in_remove_signature_ind

Omit one of the signatures in in_signatures_ind_df for the comparison if non-NULL. The parameter specifies the index of the signature to be removed.

in_additional_stratum

Include an additionally supplied stratum in comparison in non-NULL.

Value

The comparison matrix of cosine similarities.

See Also

make_comparison_matrix

compare_SMCs

run_comparison_catalogues

Examples

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eilslabs/YAPSA documentation built on May 16, 2019, 1:23 a.m.