Biocview "SomaticMutation"

Assess Tumor Microsatellite Instability with a Decision Tree Classifier from Exome Somatic Mutations
A Tool to Analyze and Design NGS Based Custom Gene Panels
A Tool to Analyze and Design NGS Based Custom Gene Panels
A Tool to Analyze and Design NGS Based Custom Gene Panels
Clonal ordering and visualization
Comprehensive genome-wide analysis of mutational processes
Comprehensive genome-wide analysis of mutational processes
Comprehensive genome-wide analysis of mutational processes
Conducting statistical inference on comparing the mutational exposures of mutational signatures by using hierarchical latent Dirichlet allocation
Conducting statistical inference on comparing the mutational exposures of mutational signatures by using hierarchical latent Dirichlet allocation
Decomposition of individual tumors into mutational signatures by signature refitting
Decomposition of individual tumors into mutational signatures by signature refitting
Detection of clonally exclusive gene or pathway pairs in a cohort of cancer patients
Detection of clonally exclusive gene or pathway pairs in a cohort of cancer patients
Dissect cancer evolution from multi-region derived tumor biopsies via somatic mutations
Empirical Bayesian approach to mutational signature discovery
Empirical Bayesian approach to mutational signature discovery
FIREVAT, FInding REliable Variants without ArTifacts
Forward Genetic Simulation of Cancer Progression with Epistasis
Genetic Algorithms for Understanding Clonal Heterogeneity and Ordering
Identification and Annotation of Protein Hotspot Residues
Identification and Annotation of Protein Hotspot Residues
Identification and Assessment of Single Nucleotide Variants through Shifts in Non-Consensus Base Call Frequencies
Identification and Assessment of Single Nucleotide Variants through Shifts in Non-Consensus Base Call Frequencies
Identification of mutational clusters in protein quaternary structures.
Longitudinal Analysis of Cancer Evolution (LACE)
Longitudinal Analysis of Cancer Evolution (LACE)
LowMACA - Low frequency Mutation Analysis via Consensus Alignment
LowMACA - Low frequency Mutation Analysis via Consensus Alignment
LowMACA - Low frequency Mutation Analysis via Consensus Alignment
Mosaic Aneuploidy Detection and Quantification using Massive Parallel Sequencing Data
Mosaic Aneuploidy Detection and Quantification using Massive Parallel Sequencing Data
Novel Mutational Signature Analysis
Package
Random walk with restart on multiplex and heterogeneous Networks
Random walk with restart on multiplex and heterogeneous Networks
Selecting the number of mutational signatures using a perplexity-based measure and cross-validation
Semi-Supervised Mixture Model
Semi-Supervised Mixture Model
Somatic Signatures
Somatic Signatures
Somatic Signatures
SparseSignatures
SparseSignatures
Summarize, Analyze and Visualize MAF Files
Summarize, Analyze and Visualize MAF Files
Summarize, Analyze and Visualize MAF Files
TRONCO, an R package for TRanslational ONCOlogy
TRONCO, an R package for TRanslational ONCOlogy
Tumor subclonality of expression-based cancer subtypes
Yet Another Package for Signature Analysis
Yet Another Package for Signature Analysis
Yet Another Package for Signature Analysis