gaucho: Genetic Algorithms for Understanding Clonal Heterogeneity and Ordering

Use genetic algorithms to determine the relationship between clones in heterogenous populations such as cancer sequencing samples

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("gaucho")
AuthorAlex Murison [aut, cre], Christopher Wardell [aut, cre]
Bioconductor views Genetics SNP Sequencing Software SomaticMutation
Date of publicationNone
MaintainerAlex Murison <Alexander.Murison@icr.ac.uk>, Christopher Wardell <Christopher.Wardell@icr.ac.uk>
LicenseGPL-3
Version1.10.0

View on Bioconductor

Files

DESCRIPTION
NAMESPACE
R
R/BYB1_G07_pruned_manpage.R R/gaucho.R R/gauchoReport.R R/gaucho_hidden_data_manpage.R R/gaucho_simple_data_manpage.R R/gaucho_synth_data_jittered_manpage.R R/gaucho_synth_data_manpage.R R/generate_phylo_matrix.R R/new_phylo.R
Thumbs.db
build
build/vignette.rds
inst
inst/NEWS
inst/doc
inst/doc/gaucho_vignette.R
inst/doc/gaucho_vignette.Rnw
inst/doc/gaucho_vignette.pdf
inst/extdata
inst/extdata/BYB1_G07_pruned.R
inst/extdata/BYB1_G07_pruned.txt
inst/extdata/gaucho_hidden_data.R
inst/extdata/gaucho_hidden_data.txt
inst/extdata/gaucho_simple_data.R
inst/extdata/gaucho_simple_data.txt
inst/extdata/gaucho_synth_data.R
inst/extdata/gaucho_synth_data.txt
inst/extdata/gaucho_synth_data_jittered.R
inst/extdata/gaucho_synth_data_jittered.txt
man
man/BYB1_G07_pruned.Rd man/gaucho.Rd man/gauchoReport.Rd man/gaucho_hidden_data.Rd man/gaucho_simple_data.Rd man/gaucho_synth_data.Rd man/gaucho_synth_data_jittered.Rd
vignettes
vignettes/BYB1_G07_abc.png
vignettes/BYB1_G07_heatmap.png
vignettes/BYB1_G07_phylogeny.png
vignettes/BYB1_G07_proportions.png
vignettes/Thumbs.db
vignettes/gaucho_bib.bib
vignettes/gaucho_hidden_data_heatmap.png
vignettes/gaucho_hidden_data_phylogeny.png
vignettes/gaucho_hidden_data_proportions.png
vignettes/gaucho_simple_data_heatmap.png
vignettes/gaucho_simple_data_phylogeny.png
vignettes/gaucho_simple_data_proportions.png
vignettes/gaucho_synthetic_data_heatmap.png
vignettes/gaucho_synthetic_data_phylogeny.png
vignettes/gaucho_synthetic_data_proportions.png
vignettes/gaucho_vignette.Rnw
vignettes/synthetic_abc.png
vignettes/synthetic_boxplot.png

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