MSIseq: Assess Tumor Microsatellite Instability with a Decision Tree Classifier from Exome Somatic Mutations
Version 1.0.0

A decision tree classifier for detecting microsatellite instability (MSI) in somatic mutation data from whole exome sequencing. MSI is detected based on different mutation rates in all sites as well as in simple sequence repeats. This mechanism can also be applied to sequence data of targeted gene panels with shorter sequence length.

Package details

AuthorMini Huang
Bioconductor views Classification Sequencing SomaticMutation
Date of publication2015-06-15 16:26:10
MaintainerMini Huang <mini.huang@nus.edu.sg>
LicenseGPL (>= 2)
Version1.0.0
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("MSIseq")

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MSIseq documentation built on May 29, 2017, 9:07 p.m.