NGStraindata: Mutation Annotation Data with Training Set Samples

Description Usage Format Details Source References

Description

This variable has the same format as NGStestdata.

Usage

1

Format

A data frame with 152,842 observations on the following 5 variables:

Chrom

a character vector that indicates the chromosome identifier without the "chr" prefix: "1", "2", ..., "22", "X", "Y"

Start_Position

a numeric vector

End_Position

a numeric vector

Variant_Type

a character vector that indicates the type of variant; legal values are "SNP", "INS" and "DEL". Other values will cause the Compute.input.variables to generate an error

Tumor_Sample_Barcode

the sample ID as a character vector

Details

This is sample input data for the Compute.input.variables function.

Source

https://tcga-data.nci.nih.gov/tcga/

References

Mutation Annotation File Format https://wiki.nci.nih.gov/display/TCGA/File+Format+Specifications


MSIseq documentation built on May 29, 2017, 9:07 p.m.