test.mutationNum: Table of Mutation Numbers in Test Set Samples

In MSIseq: Assess Tumor Microsatellite Instability with a Decision Tree Classifier from Exome Somatic Mutations

Description

This is a data frame containing the counts of 9 mutation types for each sample in NGStestdata. It was generated from Compute.input.variables

Usage

data(test.mutationNum)

Format

A data frame with 165 observations on the following 9 variables:

T.sns

total count of SNSs/Mb

S.sns

count of SNSs in simple sequence repeats/Mb

T.ind

total count of indels/Mb

S.ind

count of indels in simple sequence repeats/Mb

T

total mutation count/Mb

S

mutation count in simple sequence repeats/Mb

ratio.sns

S.sns/T.sns

ratio.ind

S.ind/T.ind

ratio

S/T

Details

This is the sample data for MSIseq.classify function input.

Source

https://tcga-data.nci.nih.gov/tcga/

MSIseq documentation built on May 2, 2019, 7:23 a.m.