NGStrainclass: MSI Status Classification for the TCGA Training Set Samples

Description Usage Format Details Source

Description

This is a data frame containing the MSI status for each sample in train.mutationNum.

Usage

1

Format

A data frame with 426 observations on the following 2 variables:

Tumor_Sample_Barcode

the sample ID as a character vector

MSI_status

a factor indicating MSI status for each sample, containing two levels: "MSI-H" and "Non-MSI-H". Other values will cause MSIseq.train to generate an error.

Details

This is the sample data for MSIseq.train function input.

Source

https://tcga-data.nci.nih.gov/tcga/


MSIseq documentation built on May 29, 2017, 9:07 p.m.