NGStrainclass: MSI Status Classification for the TCGA Training Set Samples

In MSIseq: Assess Tumor Microsatellite Instability with a Decision Tree Classifier from Exome Somatic Mutations

Description

This is a data frame containing the MSI status for each sample in train.mutationNum.

Usage

data(NGStrainclass)

Format

A data frame with 426 observations on the following 2 variables:

Tumor_Sample_Barcode

the sample ID as a character vector

MSI_status

a factor indicating MSI status for each sample, containing two levels: "MSI-H" and "Non-MSI-H". Other values will cause MSIseq.train to generate an error.

Details

This is the sample data for MSIseq.train function input.

Source

https://tcga-data.nci.nih.gov/tcga/

MSIseq documentation built on May 2, 2019, 7:23 a.m.