MSIseq-package: Assess Tumor Microsatellite Instability with a Decision Tree...
In MSIseq: Assess Tumor Microsatellite Instability with a Decision Tree Classifier from Exome Somatic Mutations
Description
Details
Author(s)
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Description
A decision tree classifier for detecting microsatellite instability (MSI) in somatic mutation data from whole exome sequencing. MSI is detected based on different mutation rates in all sites as well as in simple sequence repeats. This mechanism can also be applied to sequence data of targeted gene panels with shorter sequence length.
Details
Package: MSIseq
Type: Package
Depends: RWeka, rJava, R.utils, R (>= 3.2.0)
Imports: RWeka, rJava, R.utils
Version: 1.0.0
Date: 2014-06-10
This package contains two main functions:
MSIseq.train() is used to generate a detector for MSI status from mutation information.
MSIseq.classify() uses a detector to classify the MSI status of new tumors from mutation catalogs.
Author(s)
Mini Huang
Maintainer: Mini Huang <mini.huang@nus.edu.sg>
See Also
MSIseq documentation built on May 2, 2019, 7:23 a.m.
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Description Details Author(s) See Also
Description
A decision tree classifier for detecting microsatellite instability (MSI) in somatic mutation data from whole exome sequencing. MSI is detected based on different mutation rates in all sites as well as in simple sequence repeats. This mechanism can also be applied to sequence data of targeted gene panels with shorter sequence length.
Details
| Package: | MSIseq |
| Type: | Package |
| Depends: | RWeka, rJava, R.utils, R (>= 3.2.0) |
| Imports: | RWeka, rJava, R.utils |
| Version: | 1.0.0 |
| Date: | 2014-06-10 |
This package contains two main functions:
MSIseq.train() is used to generate a detector for MSI status from mutation information.
MSIseq.classify() uses a detector to classify the MSI status of new tumors from mutation catalogs.
Author(s)
Mini Huang
Maintainer: Mini Huang <mini.huang@nus.edu.sg>
See Also
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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