julian-gehring/Rariant: Identification and Assessment of Single Nucleotide Variants through Shifts in Non-Consensus Base Call Frequencies

The 'Rariant' package identifies single nucleotide variants from sequencing data based on the difference of binomially distributed mismatch rates between matched samples.

Getting started

Package details

AuthorJulian Gehring, Simon Anders, Bernd Klaus (EMBL Heidelberg)
Bioconductor views GenomicVariation Sequencing SomaticMutation StatisticalMethod VariantDetection Visualization
MaintainerJulian Gehring <julian.gehring@embl.de>
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
julian-gehring/Rariant documentation built on May 20, 2019, 4:20 a.m.