Files in julian-gehring/Rariant
Identification and Assessment of Single Nucleotide Variants through Shifts in Non-Consensus Base Call Frequencies
DESCRIPTION
NAMESPACE
NEWS
R/blogit.R
R/ci-adjust.R
R/ci-utils.R
R/ci.R
R/colorscales.R
R/convert.R
R/coverage-probs.R
R/examples.R
R/mismatch-plot.R
R/multi-plot.R
R/multi-stat.R
R/multi-utils.R
R/plot.R
R/rariant-highlevel.R
R/rariant-methods.R
R/rariant-standalone.R
R/rariantFromBam.R
R/rariantFromMatrix.R
R/shiny.R
R/split.R
R/stats.R
R/tally.R
R/tests.R
R/utils.R
inst/doc/rariant-inspect-ci.png
inst/doc/rariant-inspect-shift.png
inst/extdata/platinum/control.bam
inst/extdata/platinum/control.bam.bai
inst/extdata/platinum/mix.bam
inst/extdata/platinum/mix.bam.bai
inst/extdata/platinum/test.bam
inst/extdata/platinum/test.bam.bai
inst/extdata/platinum/test2.bam
inst/extdata/platinum/test2.bam.bai
inst/scripts/platinum-sim.sh
inst/scripts/rariant
inst/tests/test-ci-functions.R
inst/tests/test-rariant-highlevel.R
inst/tests/test-rariant-methods-1kg.R
inst/tests/test-tally.R
man/Rariant-package.rd
man/ci-adjust.rd
man/ci-assessment.rd
man/ci-utils.rd
man/colorscales.rd
man/convert-utils.rd
man/evidence-heatmap.rd
man/mismatch-plot.rd
man/mismatch-utils.rd
man/multi-utils.rd
man/plot-cis.rd
man/prop-cis.rd
man/prop-tests.rd
man/rariant.rd
man/shiny.rd
man/split-sample.rd
man/tally.rd
man/yesnomaybe.rd
tests/test_all.R
vignettes/Rariant-vignette.Rhtml
vignettes/Rariant-vignette.org
vignettes/bioc.css
vignettes/references.bib
vignettes/references.html
