QuartPAC: Identification of mutational clusters in protein quaternary structures.

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Identifies clustering of somatic mutations in proteins over the entire quaternary structure.

Author
Gregory Ryslik, Yuwei Cheng, Hongyu Zhao
Date of publication
None
Maintainer
Gregory Ryslik <gregory.ryslik@yale.edu>
License
GPL-2
Version
1.6.0

View on Bioconductor

Man pages

getMutations
Get Mutational Data
makeAlignedSuperStructure
Create Protein Assembly Information
quartCluster
Quaternary Protein Structure Clustering Analysis
QuartPAC-package
Identifying mutational clusters while incorporating protein...

Files in this package

QuartPAC/DESCRIPTION
QuartPAC/NAMESPACE
QuartPAC/R
QuartPAC/R/alignPositions.R
QuartPAC/R/buildMegaMutationMatrix.R
QuartPAC/R/constructCanonicalNumbering.R
QuartPAC/R/createPositionMatrix.R
QuartPAC/R/extractAtomRow.R
QuartPAC/R/extractAtoms.R
QuartPAC/R/findModelCuts.R
QuartPAC/R/getIdentifier.R
QuartPAC/R/getMutations.R
QuartPAC/R/getRangeLocInfo.R
QuartPAC/R/getSequenceLocInfo.R
QuartPAC/R/getUniprotFromPDB.R
QuartPAC/R/loadDefs.R
QuartPAC/R/makeAlignedSuperStructure.R
QuartPAC/R/makeAlignmentMaps.R
QuartPAC/R/matrix_combine.R
QuartPAC/R/quartCluster.R
QuartPAC/R/trim.R
QuartPAC/R/trim.both.R
QuartPAC/R/trim.leading.R
QuartPAC/R/trim.trailing.R
QuartPAC/R/unmap_row.R
QuartPAC/R/unmap_sequence.R
QuartPAC/R/unmap_sphere.R
QuartPAC/R/unmap_table.R
QuartPAC/build
QuartPAC/build/vignette.rds
QuartPAC/inst
QuartPAC/inst/NEWS.Rd
QuartPAC/inst/doc
QuartPAC/inst/doc/QuartPAC.R
QuartPAC/inst/doc/QuartPAC.Rnw
QuartPAC/inst/doc/QuartPAC.pdf
QuartPAC/inst/extdata
QuartPAC/inst/extdata/B2M_P61769_MutationOutput.txt
QuartPAC/inst/extdata/HFE_Q30201_MutationOutput.txt
QuartPAC/inst/unitTests
QuartPAC/inst/unitTests/test_quartCluster.R
QuartPAC/man
QuartPAC/man/QuartPAC-package.Rd
QuartPAC/man/getMutations.Rd
QuartPAC/man/makeAlignedSuperStructure.Rd
QuartPAC/man/quartCluster.Rd
QuartPAC/tests
QuartPAC/tests/runTests.R
QuartPAC/vignettes
QuartPAC/vignettes/1A6Z.png
QuartPAC/vignettes/QuartPAC.Rnw
QuartPAC/vignettes/refs.bib