GSALightning provides a fast implementation of permutation-based gene set analysis for two-sample problem. This package is particularly useful when testing simultaneously a large number of gene sets, or when a large number of permutations is necessary for more accurate p-values estimation.
|Author||Billy Heung Wing Chang|
|Date of publication||None|
|Maintainer||Billy Heung Wing Chang <email@example.com>|
expression: Breast Cancer Data from The Cancer Genome Atlas (TCGA)
GSALight: Fast Permutation-based Gene Set Analysis
GSALightning-package: Fast Permutation-based Gene Set Analysis
permTestLight: Fast Single-Gene Permutation Test
sampleInfo: Sample Information for the Breast Cancer Data from The Cancer...
targetGenes: Target Genes of Distal Regulatory Elements
wilcoxTest: Single-Gene Mann Whitney Wilcoxon Test