GSALightning: Fast Permutation-based Gene Set Analysis
Version 1.4.0

GSALightning provides a fast implementation of permutation-based gene set analysis for two-sample problem. This package is particularly useful when testing simultaneously a large number of gene sets, or when a large number of permutations is necessary for more accurate p-values estimation.

AuthorBilly Heung Wing Chang
Bioconductor views BiologicalQuestion DifferentialExpression GeneExpression GeneSetEnrichment Software Transcription
Date of publicationNone
MaintainerBilly Heung Wing Chang <billyheungwing@gmail.com>
LicenseGPL (>=2)
Version1.4.0
URL https://github.com/billyhw/GSALightning
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("GSALightning")

Getting started

Package overview
GSALightning: Ultra-fast Permutation-based Gene Set Analysis

Popular man pages

expression: Breast Cancer Data from The Cancer Genome Atlas (TCGA)
GSALight: Fast Permutation-based Gene Set Analysis
GSALightning-package: Fast Permutation-based Gene Set Analysis
permTestLight: Fast Single-Gene Permutation Test
sampleInfo: Sample Information for the Breast Cancer Data from The Cancer...
targetGenes: Target Genes of Distal Regulatory Elements
wilcoxTest: Single-Gene Mann Whitney Wilcoxon Test
See all...

All man pages Function index File listing

Man pages

expression: Breast Cancer Data from The Cancer Genome Atlas (TCGA)
GSALight: Fast Permutation-based Gene Set Analysis
GSALightning-package: Fast Permutation-based Gene Set Analysis
permTestLight: Fast Single-Gene Permutation Test
sampleInfo: Sample Information for the Breast Cancer Data from The Cancer...
targetGenes: Target Genes of Distal Regulatory Elements
wilcoxTest: Single-Gene Mann Whitney Wilcoxon Test

Functions

GSALight Man page Source code
GSALightning Man page
GSALightning-package Man page
GSAfunc Source code
GSApairedfunc Source code
dataTable2Mat Source code
expression Man page
list2DataTable Source code
permTestLight Man page Source code
pvalFromPermMat Source code
rowPairedTtests Source code
rowtests Source code
sampleInfo Man page
targetGenes Man page
wilcoxTest Man page Source code

Files

DESCRIPTION
LICENSE
NAMESPACE
R
R/GSALightning.r
build
build/partial.rdb
build/vignette.rds
data
data/datalist
data/expression.rda
data/sampleInfo.rda
data/targetGenes.rda
inst
inst/NEWS
inst/doc
inst/doc/vignette.R
inst/doc/vignette.Rmd
inst/doc/vignette.html
man
man/GSALight.Rd
man/GSALightning-package.Rd
man/expression.Rd
man/permTestLight.Rd
man/sampleInfo.Rd
man/targetGenes.Rd
man/wilcoxTest.Rd
vignettes
vignettes/vignette.Rmd
GSALightning documentation built on May 20, 2017, 9:21 p.m.

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