Use log-linear models to perform hypergeometric and chi-squared tests for gene set enrichments for two (based on contingency tables) or three categories (contingency cubes). Categories can be differentially expressed genes, GO terms, sequence length, GC content, chromosomal position, phylostrata, divergence-strata, ....
|Date of publication||None|
|Maintainer||Markus Boenn <email@example.com>|
|License||GPL (>= 2)|
concub-class: Class '"concub"'
concubfilter-class: Class '"concubfilter"'
filterConCub: Filter results from two- or three-way tests
geecc-package: Gene set enrichment for two or three categories
GO2list: Filter GO and KEGG database
marioni: Affymetrix microarray gene expression data
plotConCub: Generate a heatmap showing log2 odds ratios and P-values.
pval2star: Transform P-values to stars
runConCub: Enrichment analysis on two- or three-way contingency tables.
setop: Optimized operations of sets of character-vectors