Use log-linear models to perform hypergeometric and chi-squared tests for gene set enrichments for two (based on contingency tables) or three categories (contingency cubes). Categories can be differentially expressed genes, GO terms, sequence length, GC content, chromosomal position, phylostrata, divergence-strata, ....
|Bioconductor views||BiologicalQuestion GO GeneExpression GeneSetEnrichment Microarray RNASeq StatisticalMethod Transcription WorkflowStep|
|Maintainer||Markus Boenn <[email protected]>|
|License||GPL (>= 2)|
|Package repository||View on Bioconductor|
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