marioni: Affymetrix microarray gene expression data

In geecc: Gene Set Enrichment Analysis Extended to Contingency Cubes

Description

The experiment aims to detect differentially expressed genes in Affymetrix micro-arrays and RNA-seq data in a comparative study. For this, samples from two tissues (liver and kidney) were compared.

Usage

marioni

Format

A data.frame containing gene expression values from an Affymetrix microarray, including P-values, log2-fold changes and alternative annotations

Value

A data.frame.

Source

http://giladlab.uchicago.edu/data.html

References

Marioni, J. C. et al. (2008) RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays. Genome research

Examples

data(marioni)
head(marioni[, 1:5])

geecc documentation built on April 28, 2020, 8:19 p.m.