Biocview "WorkflowStep"

A fluent interface for manipulating GenomicRanges
A fluent interface for manipulating GenomicRanges
An integrated analysis package of Gene expression and Copy number alteration
An integrated analysis package of miRNA and mRNA expression data
An integrated analysis package of miRNA and mRNA expression data
Annotation of Optical Mapping Structural variants
Annotation of Optical Mapping Structural variants
An R package for the analysis and result reporting of RNA-Seq data by combining multiple statistical algorithms
An R package for the analysis and result reporting of RNA-Seq data by combining multiple statistical algorithms
An R package for the analysis and result reporting of RNA-Seq data by combining multiple statistical algorithms
An R package for the analysis and result reporting of RNA-Seq data by combining multiple statistical algorithms.
An R package for the analysis and result reporting of RNA-Seq data by combining multiple statistical algorithms.
An R package for the analysis and result reporting of RNA-Seq data by combining multiple statistical algorithms.
An R package for the analysis and result reporting of RNA-Seq data by combining multiple statistical algorithms.
A package of creating an algorithm of identifying microRNA-competing endogenous RNA triplets
ascend - Analysis of Single Cell Expression, Normalisation, and Differential expression
AUCell: Analysis of 'gene set' activity in single-cell RNA-seq data (e.g. identify cells with specific gene signatures)
AUCell: Analysis of 'gene set' activity in single-cell RNA-seq data (e.g. identify cells with specific gene signatures)
Bioinformatics pipelines based on Rcwl
Bioinformatics pipelines based on Rcwl
ChIPanalyser: Predicting Transcription Factor Binding Sites
ChIPanalyser: Predicting Transcription Factor Binding Sites
ChIPanalyser: Predicting Transcription Factor Binding Sites
Compensates for the bias introduced by median normalization in phosphoproteomics
Data processing & analysis tools for Metabolomics and other omics
Data processing & analysis tools for Metabolomics and other omics
Data processing & analysis tools for Metabolomics and other omics
Detecting patterns of post-transcriptional modifications using machine learning
Detecting patterns of post-transcriptional modifications using machine learning
Detection of 2'-O methylations by RiboMethSeq
Detection of 2'-O methylations by RiboMethSeq
Detection of m7G, m3C and D modification by AlkAnilineSeq
Detection of m7G, m3C and D modification by AlkAnilineSeq
Detection of post-transcriptional modifications in high throughput sequencing data
Detection of post-transcriptional modifications in high throughput sequencing data
Differential transcript usage and tuQTL analyses with Dirichlet-multinomial model in RNA-seq
Differential transcript usage and tuQTL analyses with Dirichlet-multinomial model in RNA-seq
Differential transcript usage and tuQTL analyses with Dirichlet-multinomial model in RNA-seq
Exposome and omic data associatin and integration analysis
Exposome and omic data associatin and integration analysis
Feature Specific Quantile Normalization
Gene-level RNA-seq differential expression and pathway analysis using Rsubread and the edgeR quasi-likelihood pipeline
Gene Set Enrichment Analysis Extended to Contingency Cubes
GUIDE-seq analysis pipeline
GUIDE-seq analysis pipeline
Importing a tRNAscan-SE result file as GRanges object
Importing a tRNAscan-SE result file as GRanges object
Importing a tRNAscan-SE result file as GRanges object
kallisto | bustools R utilities
kallisto | bustools R utilities
kallisto | bustools R utilities
Maximum Likelihood Decay Modeling of RNA Degradation Data
Maximum Likelihood Decay Modeling of RNA Degradation Data
nanotatoR: next generation structural variant annotation and classification
Network-based prioritization of putative metabolite IDs
Network-based prioritization of putative metabolite IDs
Network-based prioritization of putative metabolite IDs
Non-detects in qPCR data
Non-detects in qPCR data
Non-detects in qPCR data
PGCA: An Algorithm to Link Protein Groups Created from MS/MS Data
PGCA: An Algorithm to Link Protein Groups Created from MS/MS Data
PhantomPurgeR
Pipeline framework for bioinformatics in R
Pipeline framework for bioinformatics in R
Replicate oriented Visualization of a genomic region
Replicate oriented Visualization of a genomic region
Replicate oriented Visualization of a genomic region
R Package for Processing High Content Screening data
R Package for Processing High Content Screening data
R Package for Processing High Content Screening data
R utilities for rabix.
R Wrapper for DGIdb
R Wrapper for DGIdb
SCANVIS - a tool for SCoring, ANnotating and VISualizing splice junctions
SCANVIS - a tool for SCoring, ANnotating and VISualizing splice junctions
Single Cell RNA-Seq UMI Filtering Facilitator (scruff)
Single Cell RNA-Seq UMI Filtering Facilitator (scruff)
Single Cell RNA-Seq UMI Filtering Facilitator (scruff)
Single Cell RNA-Seq UMI Filtering Facilitator (scruff)
Single Cell RNA-Seq UMI Filtering Facilitator (scruff)
Single Cell RNA-Seq UMI Filtering Facilitator (scruff)
Statistical analysis of single molecule trajectories
Statistical analysis of single molecule trajectories
Statistical analysis of single molecule trajectories
Statistical analysis of single molecule trajectories
Statistics in R Using Class-based Templates
Statistics in R Using Class-based Templates
Synteny Alignment and Analysis for Saccharomyces sensu stricto
systemPipeRdata: NGS workflow templates and sample data
TCGA utility functions for data management
TCGA utility functions for data management
TCGA utility functions for data management
TCGA utility functions for data management
Wrap Command Tools and Pipelines Using CWL
Wrap Command Tools and Pipelines Using CWL