Biocview "WorkflowStep"

A fluent interface for manipulating GenomicRanges

A Framework to Combine, Analize and Interpret CNVs Calling Results

An integrated analysis package of Gene expression and Copy number alteration

An integrated analysis package of miRNA and mRNA expression data

An R interface to the Common Workflow Language

An R package for the analysis and result reporting of RNA-Seq data by combining multiple statistical algorithms

An R package for the analysis and result reporting of RNA-Seq data by combining multiple statistical algorithms.

An R package for the easy provision of simple but complete tab-delimited genomic annotation from a variety of sources and organisms

A package of creating an algorithm of identifying microRNA-competing endogenous RNA triplets

ascend - Analysis of Single Cell Expression, Normalisation, and Differential expression

a statistical framework for differential pseudotime analysis in multiple single-cell RNA-seq samples

AUCell: Analysis of 'gene set' activity in single-cell RNA-seq data (e.g. identify cells with specific gene signatures)

Bioinformatics pipelines based on Rcwl

Calculate, visualize and analyse overlap between genomic regions

ChIPanalyser: Predicting Transcription Factor Binding Sites

Compensates for the bias introduced by median normalization in phosphoproteomics. This is done by taking enriched and non-enriched data and creating a normalization factor.

Data processing & analysis tools for Metabolomics and other omics

Detecting patterns of post-transcriptional modifications using machine learning

Detection of 2'-O methylations by RiboMethSeq

Detection of m7G, m3C and D modification by AlkAnilineSeq

Detection of post-transcriptional modifications in high throughput sequencing data

Differential transcript usage and tuQTL analyses with Dirichlet-multinomial model in RNA-seq

Exposome and omic data associatin and integration analysis

Feature Specific Quantile Normalization

Gene-level RNA-seq differential expression and pathway analysis using Rsubread and the edgeR quasi-likelihood pipeline

Generate Quality Surrogate Variable Analysis for Degradation Correction

Gene Set Enrichment Analysis Extended to Contingency Cubes

GUIDE-seq analysis pipeline

GUIDE-seq and PEtag-seq analysis pipeline

Importing a tRNAscan-SE result file as GRanges object

Interactive Cytometry Gating in R

kallisto | bustools R utilities

Mass Cytometry S4 Class Structure Pipeline for Images

Maximum Likelihood Decay Modeling of RNA Degradation Data

methometR: Extracting methylation information from Optical Genome Maps

Microbial community dIversity and Network Analysis

Multi-Omics (time-course) network-based integration and interpretation

nanotatoR: next generation structural variant annotation and classification

Network-based prioritization of putative metabolite IDs

Next generation structural variant annotation and classification

Non-detects in qPCR data

PGCA: An Algorithm to Link Protein Groups Created from MS/MS Data

PhantomPurgeR

Pipeline framework for bioinformatics in R

Replicate oriented Visualization of a genomic region

R Package for Processing High Content Screening data

R utilities for rabix.

R Wrapper for DGIdb

SCANVIS - a tool for SCoring, ANnotating and VISualizing splice junctions

Single Cell RNA-Seq UMI Filtering Facilitator (scruff)

Statistical analysis of single molecule trajectories

Statistics in R Using Class-based Templates

Synteny Alignment and Analysis for Saccharomyces sensu stricto

systemPipeRdata: Workflow templates and sample data

systemPipeR: workflow management and report generation environment

TCGA utility functions for data management

Biocview "WorkflowStep"

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