rDGIdb: R Wrapper for DGIdb

The rDGIdb package provides a wrapper for the Drug Gene Interaction Database (DGIdb). For simplicity, the wrapper query function and output resembles the user interface and results format provided on the DGIdb website (http://dgidb.genome.wustl.edu/).

AuthorThomas Thurnherr, Franziska Singer, Daniel J. Stekhoven, and Niko Beerenwinkel
Date of publicationNone
MaintainerThomas Thurnherr <thomas.thurnherr@bsse.ethz.ch>
LicenseMIT + file LICENSE
Version1.0.0

View on Bioconductor

Functions

byGene Man page
byGene,rDGIdbResult-method Man page
detailedResults Man page
detailedResults,rDGIdbResult-method Man page
geneCategories Man page
interactionTypes Man page
new,rDGIdbResult-method Man page
plotInteractionsBySource Man page
queryDGIdb Man page
rDGIdbFilters Man page
rDGIdbResult Man page
rDGIdbResult-class Man page
resourceVersions Man page
resultSummary Man page
resultSummary,rDGIdbResult-method Man page
searchTermSummary Man page
searchTermSummary,rDGIdbResult-method Man page
sourceDatabases Man page

Files

rDGIdb/DESCRIPTION
rDGIdb/LICENSE
rDGIdb/NAMESPACE
rDGIdb/R
rDGIdb/R/plotInteractionsBySource.R rDGIdb/R/queryDGIdb.R rDGIdb/R/rDGIdbResult.R rDGIdb/R/resourceVersions.R
rDGIdb/README.md
rDGIdb/build
rDGIdb/build/vignette.rds
rDGIdb/inst
rDGIdb/inst/CITATION
rDGIdb/inst/NEWS
rDGIdb/inst/doc
rDGIdb/inst/doc/vignette.R
rDGIdb/inst/doc/vignette.Rnw
rDGIdb/inst/doc/vignette.pdf
rDGIdb/man
rDGIdb/man/plotInteractionsBySource.Rd rDGIdb/man/queryDGIdb.Rd rDGIdb/man/rDGIdbFilters.Rd rDGIdb/man/rDGIdbResult-class.Rd rDGIdb/man/resourceVersions.Rd
rDGIdb/tests
rDGIdb/tests/testthat
rDGIdb/tests/testthat.R
rDGIdb/tests/testthat/test.plotInteractionsBySource.R
rDGIdb/tests/testthat/test.queryDGIdb.R
rDGIdb/vignettes
rDGIdb/vignettes/references.bib
rDGIdb/vignettes/vignette.Rnw

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.