rDGIdb: R Wrapper for DGIdb

The rDGIdb package provides a wrapper for the Drug Gene Interaction Database (DGIdb). For simplicity, the wrapper query function and output resembles the user interface and results format provided on the DGIdb website (http://dgidb.genome.wustl.edu/).

Author
Thomas Thurnherr, Franziska Singer, Daniel J. Stekhoven, and Niko Beerenwinkel
Date of publication
None
Maintainer
Thomas Thurnherr <thomas.thurnherr@bsse.ethz.ch>
License
MIT + file LICENSE
Version
1.0.0

View on Bioconductor

Man pages

plotInteractionsBySource
Interactions by source
queryDGIdb
Query DGIdb using R
rDGIdbFilters
Filter options for rDGIdb queries.
rDGIdbResult-class
Result object of a rDGIdb query
resourceVersions
Version numbers of DGIdb resources

Files in this package

rDGIdb/DESCRIPTION
rDGIdb/LICENSE
rDGIdb/NAMESPACE
rDGIdb/R
rDGIdb/R/plotInteractionsBySource.R
rDGIdb/R/queryDGIdb.R
rDGIdb/R/rDGIdbResult.R
rDGIdb/R/resourceVersions.R
rDGIdb/README.md
rDGIdb/build
rDGIdb/build/vignette.rds
rDGIdb/inst
rDGIdb/inst/CITATION
rDGIdb/inst/NEWS
rDGIdb/inst/doc
rDGIdb/inst/doc/vignette.R
rDGIdb/inst/doc/vignette.Rnw
rDGIdb/inst/doc/vignette.pdf
rDGIdb/man
rDGIdb/man/plotInteractionsBySource.Rd
rDGIdb/man/queryDGIdb.Rd
rDGIdb/man/rDGIdbFilters.Rd
rDGIdb/man/rDGIdbResult-class.Rd
rDGIdb/man/resourceVersions.Rd
rDGIdb/tests
rDGIdb/tests/testthat
rDGIdb/tests/testthat.R
rDGIdb/tests/testthat/test.plotInteractionsBySource.R
rDGIdb/tests/testthat/test.queryDGIdb.R
rDGIdb/vignettes
rDGIdb/vignettes/references.bib
rDGIdb/vignettes/vignette.Rnw