rDGIdb: R Wrapper for DGIdb
Version 1.2.0

The rDGIdb package provides a wrapper for the Drug Gene Interaction Database (DGIdb). For simplicity, the wrapper query function and output resembles the user interface and results format provided on the DGIdb website (http://dgidb.genome.wustl.edu/).

Browse man pages Browse package API and functions Browse package files

AuthorThomas Thurnherr, Franziska Singer, Daniel J. Stekhoven, and Niko Beerenwinkel
Bioconductor views Annotation FunctionalGenomics Pharmacogenetics Pharmacogenomics ResearchField Software WorkflowStep
Date of publicationNone
MaintainerThomas Thurnherr <thomas.thurnherr@bsse.ethz.ch>
LicenseMIT + file LICENSE
Version1.2.0
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("rDGIdb")

Man pages

plotInteractionsBySource: Interactions by source
queryDGIdb: Query DGIdb using R
rDGIdbFilters: Filter options for rDGIdb queries.
rDGIdbResult-class: Result object of a rDGIdb query
resourceVersions: Version numbers of DGIdb resources

Functions

byGene Man page
byGene,rDGIdbResult-method Man page
detailedResults Man page
detailedResults,rDGIdbResult-method Man page
geneCategories Man page Source code
getResultSummary Source code
getWebsite Source code
interactionTypes Man page Source code
new,rDGIdbResult-method Man page
plotInteractionsBySource Man page Source code
queryDGIdb Man page Source code
queryDgidbPost Source code
rDGIdbFilters Man page
rDGIdbResult Man page
rDGIdbResult-class Man page
resourceVersions Man page Source code
resultSummary Man page
resultSummary,rDGIdbResult-method Man page
searchTermSummary Man page
searchTermSummary,rDGIdbResult-method Man page
sourceDatabases Man page Source code

Files

DESCRIPTION
LICENSE
NAMESPACE
R
R/plotInteractionsBySource.R
R/queryDGIdb.R
R/rDGIdbResult.R
R/resourceVersions.R
README.md
build
build/vignette.rds
inst
inst/CITATION
inst/NEWS
inst/doc
inst/doc/vignette.R
inst/doc/vignette.Rnw
inst/doc/vignette.pdf
man
man/plotInteractionsBySource.Rd
man/queryDGIdb.Rd
man/rDGIdbFilters.Rd
man/rDGIdbResult-class.Rd
man/resourceVersions.Rd
tests
tests/testthat
tests/testthat.R
tests/testthat/test.plotInteractionsBySource.R
tests/testthat/test.queryDGIdb.R
vignettes
vignettes/references.bib
vignettes/vignette.Rnw
rDGIdb documentation built on May 20, 2017, 9:16 p.m.