rDGIdb: R Wrapper for DGIdb

The rDGIdb package provides a wrapper for the Drug Gene Interaction Database (DGIdb). For simplicity, the wrapper query function and output resembles the user interface and results format provided on the DGIdb website (http://dgidb.genome.wustl.edu/).

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("rDGIdb")
AuthorThomas Thurnherr, Franziska Singer, Daniel J. Stekhoven, and Niko Beerenwinkel
Bioconductor views Annotation FunctionalGenomics Pharmacogenetics Pharmacogenomics ResearchField Software WorkflowStep
Date of publicationNone
MaintainerThomas Thurnherr <thomas.thurnherr@bsse.ethz.ch>
LicenseMIT + file LICENSE
Version1.0.0

View on Bioconductor

Functions

byGene Man page
byGene,rDGIdbResult-method Man page
detailedResults Man page
detailedResults,rDGIdbResult-method Man page
geneCategories Man page
interactionTypes Man page
new,rDGIdbResult-method Man page
plotInteractionsBySource Man page
queryDGIdb Man page
rDGIdbFilters Man page
rDGIdbResult Man page
rDGIdbResult-class Man page
resourceVersions Man page
resultSummary Man page
resultSummary,rDGIdbResult-method Man page
searchTermSummary Man page
searchTermSummary,rDGIdbResult-method Man page
sourceDatabases Man page

Files

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

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