rDGIdbFilters: Filter options for rDGIdb queries.
In rDGIdb: R Wrapper for DGIdb

Description Usage Value Author(s) References See Also Examples

The gene categories, interaction types, and source databases available to filter queries with queryDGIdb.

geneCategories()

interactionTypes()

sourceDatabases()

geneCategories returns a character vector of available gene categories which can be used to filter DGIdb queries with queryDGIdb.

interactionTypes returns a character vector of available interaction types which can be used to filter DGIdb queries with queryDGIdb.

sourceDatabases returns a character vector of available source databases which can be used to filter DGIdb queries with queryDGIdb.

Thomas Thurnherr <thomas.thurnherr@gmail.com>

Wagner AH, Coffman AC, Ainscough BJ, Spies NC, Skidmore ZL, Campbell KM, Krysiak K, Pan D, McMichael JF, Eldred JM, Walker JR, Wilson RK, Mardis ER, Griffith M, Griffith OL. DGIdb 2.0: mining clinically relevant drug-gene interactions. Nucleic Acids Research. 2016 Jan 4;44(D1):D1036-44. doi:10.1093/nar/gkv1165.

queryDGIdb, rDGIdbResult, plotInteractionsBySource

geneCategories()
interactionTypes()
sourceDatabases()
res <- queryDGIdb(genes = "AP1",
            interactionTypes = NULL,
            geneCategories = NULL,
            sourceDatabases = NULL)