rDGIdbResult-class: Result object of a rDGIdb query
In rDGIdb: R Wrapper for DGIdb

Description Usage Arguments Value Author(s) References See Also Examples

S4 helper functions to access DGIdb results, formatted in a similar way as result tables on the DGIdb web interface.

## S4 method for signature 'rDGIdbResult'
resultSummary(object)

## S4 method for signature 'rDGIdbResult'
detailedResults(object)

## S4 method for signature 'rDGIdbResult'
byGene(object)

## S4 method for signature 'rDGIdbResult'
searchTermSummary(object)

object

A rDGIdbResult object returned by queryDGIdb.

resultSummary returns a data.frame that summarizes drug-gene interactions by the source(s) that reported them.

detailedResult returns a data.frame with search terms matching exactly one gene that has one or more drug interactions.

byGene returns a data.frame with drug interaction count and druggable categories associated with each gene.

searchTermSummary returns a data.frame that summarizes the attempt to map gene names supplied by the user to gene records in DGIdb.

Thomas Thurnherr <thomas.thurnherr@gmail.com>

Wagner AH, Coffman AC, Ainscough BJ, Spies NC, Skidmore ZL, Campbell KM, Krysiak K, Pan D, McMichael JF, Eldred JM, Walker JR, Wilson RK, Mardis ER, Griffith M, Griffith OL. DGIdb 2.0: mining clinically relevant drug-gene interactions. Nucleic Acids Research. 2016 Jan 4;44(D1):D1036-44. doi:10.1093/nar/gkv1165.

queryDGIdb, rDGIdbFilters, plotInteractionsBySource

genes <- c("XYZA", "TNF", "IL6", "IL8")
result <- queryDGIdb(genes = genes)
resultSummary(result)
detailedResults(result)
byGene(result)
searchTermSummary(result)