The package provides two frameworks. One for the differential transcript usage analysis between different conditions and one for the tuQTL analysis. Both are based on modeling the counts of genomic features (i.e., transcripts) with the Dirichlet-multinomial distribution. The package also makes available functions for visualization and exploration of the data and results.
|Author||Malgorzata Nowicka [aut, cre]|
|Bioconductor views||AlternativeSplicing DifferentialExpression DifferentialSplicing GeneExpression Genetics MultipleComparison RNASeq SNP Sequencing WorkflowStep|
|Maintainer||Malgorzata Nowicka <firstname.lastname@example.org>|
|License||GPL (>= 3)|
|Package repository||View on Bioconductor|
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