DRIMSeq: Differential transcript usage and tuQTL analyses with Dirichlet-multinomial model in RNA-seq

The package provides two frameworks. One for the differential transcript usage analysis between different conditions and one for the tuQTL analysis. Both are based on modeling the counts of genomic features (i.e., transcripts) with the Dirichlet-multinomial distribution. The package also makes available functions for visualization and exploration of the data and results.

Package details

AuthorMalgorzata Nowicka [aut, cre]
Bioconductor views AlternativeSplicing DifferentialExpression DifferentialSplicing GeneExpression Genetics ImmunoOncology MultipleComparison RNASeq SNP Sequencing WorkflowStep
MaintainerMalgorzata Nowicka <gosia.nowicka.uzh@gmail.com>
LicenseGPL (>= 3)
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))


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DRIMSeq documentation built on Nov. 8, 2020, 8:25 p.m.