anamiR: An integrated analysis package of miRNA and mRNA expression data

This package is intended to identify potential interactions of miRNA-target gene interactions from miRNA and mRNA expression data. It contains functions for statistical test, databases of miRNA-target gene interaction and functional analysis.

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("anamiR")
AuthorTi-Tai Wang [aut, cre], Tzu-Pin Lu [aut], Chien-Yueh Lee[ctb,] Eric Y. Chuang [aut]
Bioconductor views AssayDomain BiologicalQuestion DifferentialExpression GeneExpression GeneRegulation GeneSetEnrichment GeneTarget Genetics Microarray Normalization Pathways ResearchField Sequencing Software Technology WorkflowStep miRNA
Date of publicationNone
MaintainerTi-Tai Wang <r04945002@ntu.edu.tw>
LicenseGPL-2
Version1.4.0
https://github.com/AllenTiTaiWang/anamiR

View on Bioconductor

Functions

anamiR Man page
anamiR-package Man page
database_support Man page
differExp_continuous Man page
differExp_discrete Man page
egSymb Man page
enrichment Man page
GSEA_ana Man page
GSEA_res Man page
heat_vis Man page
miR_converter Man page
mirna Man page
mrna Man page
msigdb.gs Man page
multi_Differ Man page
negative_cor Man page
normalization Man page
pheno.mirna Man page
pheno.mrna Man page
table_pre Man page

Files

DESCRIPTION
NAMESPACE
R
R/GSEA_ana.R R/GSEA_res.R R/anamiR.R R/data_mirna.R R/data_mrna.R R/data_pheno.mirna.R R/data_pheno.mrna.R R/data_table_pre.R R/database_support.R R/differExp_continuous.R R/differExp_discrete.R R/egSymb.R R/enrichment.R R/heat_vis.R R/miR_converter.R R/msigdb.gs.R R/multi_Differ.R R/negative_cor.R R/normalization.R
anamiR.Rproj
build
build/vignette.rds
data
data/datalist
data/egSymb.rda
data/mirna.rda
data/mrna.rda
data/msigdb.gs.rda
data/pheno.mirna.rda
data/pheno.mrna.rda
data/table_pre.rda
inst
inst/CITATION
inst/NEWS.Rd
inst/doc
inst/doc/IntroductionToanamiR.R
inst/doc/IntroductionToanamiR.Rmd
inst/doc/IntroductionToanamiR.html
inst/extdata
inst/extdata/GSE19536_mirna.csv
inst/extdata/GSE19536_mrna.csv
inst/extdata/pheno_data.csv
man
man/GSEA_ana.Rd man/GSEA_res.Rd man/anamiR.Rd man/database_support.Rd man/differExp_continuous.Rd man/differExp_discrete.Rd man/egSymb.Rd man/enrichment.Rd man/heat_vis.Rd man/miR_converter.Rd man/mirna.Rd man/mrna.Rd man/msigdb.gs.Rd man/multi_Differ.Rd man/negative_cor.Rd man/normalization.Rd man/pheno.mirna.Rd man/pheno.mrna.Rd man/table_pre.Rd
vignettes
vignettes/IntroductionToanamiR.Rmd
vignettes/pics
vignettes/pics/GSEA.png
vignettes/pics/workflow.png

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.