anamiR: An integrated analysis package of miRNA and mRNA expression data

This package is intended to identify potential interactions of miRNA-target gene interactions from miRNA and mRNA expression data. It contains functions for statistical test, databases of miRNA-target gene interaction and functional analysis.

Author
Ti-Tai Wang [aut, cre], Tzu-Pin Lu [aut], Chien-Yueh Lee[ctb,] Eric Y. Chuang [aut]
Date of publication
None
Maintainer
Ti-Tai Wang <r04945002@ntu.edu.tw>
License
GPL-2
Version
1.0.0
URLs

View on Bioconductor

Man pages

anamiR
anamiR: An integrated analysis package of miRNA and mRNA...
database_support
Intersect with databases for potential miRNA-target gene...
differExp_continuous
Find differential expression genes or miRNAs from given...
differExp_discrete
Find differential expression genes or miRNAs from given...
enrichment
Enrich pathway with genes from potential miRNA-target gene...
heat_vis
Using Fold-Chang information to draw a heatmap
miR_converter
Convert miRNA annotation to the miRBase 21 version
mirna
miRNA expression data about breast cancer
mrna
mRNA expression data about breast cancer
multi_Differ
Find differential expression groups of each genes or miRNA...
negative_cor
Find the correlation coefficient between each gene and miRNA.
normalization
Normalize expression data
pheno.mirna
phenotype data of 'mirna' about breast cancer
pheno.mrna
phenotype data of 'mrna' about breast cancer

Files in this package

anamiR/DESCRIPTION
anamiR/NAMESPACE
anamiR/R
anamiR/R/anamiR.R
anamiR/R/data_mirna.R
anamiR/R/data_mrna.R
anamiR/R/data_pheno.mirna.R
anamiR/R/data_pheno.mrna.R
anamiR/R/database_support.R
anamiR/R/differExp_continuous.R
anamiR/R/differExp_discrete.R
anamiR/R/enrichment.R
anamiR/R/heat_vis.R
anamiR/R/miR_converter.R
anamiR/R/multi_Differ.R
anamiR/R/negative_cor.R
anamiR/R/normalization.R
anamiR/build
anamiR/build/vignette.rds
anamiR/data
anamiR/data/mirna.rda
anamiR/data/mrna.rda
anamiR/data/pheno.mirna.rda
anamiR/data/pheno.mrna.rda
anamiR/inst
anamiR/inst/CITATION
anamiR/inst/NEWS.Rd
anamiR/inst/doc
anamiR/inst/doc/IntroductionToanamiR.R
anamiR/inst/doc/IntroductionToanamiR.Rmd
anamiR/inst/doc/IntroductionToanamiR.html
anamiR/man
anamiR/man/anamiR.Rd
anamiR/man/database_support.Rd
anamiR/man/differExp_continuous.Rd
anamiR/man/differExp_discrete.Rd
anamiR/man/enrichment.Rd
anamiR/man/heat_vis.Rd
anamiR/man/miR_converter.Rd
anamiR/man/mirna.Rd
anamiR/man/mrna.Rd
anamiR/man/multi_Differ.Rd
anamiR/man/negative_cor.Rd
anamiR/man/normalization.Rd
anamiR/man/pheno.mirna.Rd
anamiR/man/pheno.mrna.Rd
anamiR/vignettes
anamiR/vignettes/IntroductionToanamiR.Rmd
anamiR/vignettes/pics
anamiR/vignettes/pics/workflow.png