iGC: An integrated analysis package of Gene expression and Copy number alteration

This package is intended to identify differentially expressed genes driven by Copy Number Alterations from samples with both gene expression and CNA data.

AuthorYi-Pin Lai [aut], Liang-Bo Wang [aut, cre], Tzu-Pin Lu [aut], Eric Y. Chuang [aut]
Date of publicationNone
MaintainerLiang-Bo Wang <r02945054@ntu.edu.tw>
LicenseGPL-2
Version1.4.0
http://github.com/ccwang002/iGC

View on Bioconductor

Files

iGC/DESCRIPTION
iGC/NAMESPACE
iGC/R
iGC/R/create_gene_exp.R iGC/R/create_sample_desc.R iGC/R/data_hg19DBNM.R iGC/R/direct_gene_cna.R iGC/R/faster_gene_cna.R iGC/R/find_cna_driven_gene.R iGC/R/iGC.R
iGC/build
iGC/build/vignette.rds
iGC/data
iGC/data/hg19DBNM.rda
iGC/inst
iGC/inst/CITATION
iGC/inst/NEWS.Rd
iGC/inst/doc
iGC/inst/doc/Introduction.R
iGC/inst/doc/Introduction.Rmd
iGC/inst/doc/Introduction.html
iGC/inst/extdata
iGC/inst/extdata/CNA
iGC/inst/extdata/CNA/A04_697150.hg19.txt
iGC/inst/extdata/CNA/A05_697032.hg19.txt
iGC/inst/extdata/CNA/A07_697200.hg19.txt
iGC/inst/extdata/CNA/A09_697146.hg19.txt
iGC/inst/extdata/CNA/B01_697160.hg19.txt
iGC/inst/extdata/CNA/B03_697186.hg19.txt
iGC/inst/extdata/CNA/B05_697036.hg19.txt
iGC/inst/extdata/CNA/B07_697190.hg19.txt
iGC/inst/extdata/CNA/B08_697166.hg19.txt
iGC/inst/extdata/CNA/B10_697116.hg19.txt
iGC/inst/extdata/CNA/B11_697062.hg19.txt
iGC/inst/extdata/CNA/C01_697154.hg19.txt
iGC/inst/extdata/CNA/C02_697152.hg19.txt
iGC/inst/extdata/CNA/C03_707088.hg19.txt
iGC/inst/extdata/CNA/C04_697074.hg19.txt
iGC/inst/extdata/CNA/C06_697142.hg19.txt
iGC/inst/extdata/GE
iGC/inst/extdata/GE/US82800149_251976012154_S01.tcga_level3.txt
iGC/inst/extdata/GE/US82800149_251976012155_S01.tcga_level3.txt
iGC/inst/extdata/GE/US82800149_251976012200_S01.tcga_level3.txt
iGC/inst/extdata/GE/US82800149_251976012204_S01.tcga_level3.txt
iGC/inst/extdata/GE/US82800149_251976012205_S01.tcga_level3.txt
iGC/inst/extdata/GE/US82800149_251976012210_S01.tcga_level3.txt
iGC/inst/extdata/GE/US82800149_251976012261_S01.tcga_level3.txt
iGC/inst/extdata/GE/US82800149_251976012263_S01.tcga_level3.txt
iGC/inst/extdata/GE/US82800149_251976012264_S01.tcga_level3.txt
iGC/inst/extdata/GE/US82800149_251976012483_S01.tcga_level3.txt
iGC/inst/extdata/GE/US82800149_251976012487_S01.tcga_level3.txt
iGC/inst/extdata/GE/US82800149_251976012503_S01.tcga_level3.txt
iGC/inst/extdata/GE/US82800149_251976012504_S01.tcga_level3.txt
iGC/inst/extdata/GE/US82800149_251976012510_S01.tcga_level3.txt
iGC/inst/extdata/GE/US82800149_251976012512_S01.tcga_level3.txt
iGC/inst/extdata/GE/US82800149_251976012517_S01.tcga_level3.txt
iGC/inst/extdata/sample_desc.csv
iGC/man
iGC/man/create_gene_cna.Rd iGC/man/create_gene_exp.Rd iGC/man/create_sample_desc.Rd iGC/man/direct_gene_cna.Rd iGC/man/find_cna_driven_gene.Rd iGC/man/hg19DBNM.Rd iGC/man/iGC.Rd
iGC/vignettes
iGC/vignettes/Introduction.Rmd
iGC/vignettes/pics
iGC/vignettes/pics/analysis_workflow.png

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.