Files in iGC

An integrated analysis package of Gene expression and Copy number alteration

NAMESPACE

DESCRIPTION

build/vignette.rds

data/hg19DBNM.rda

R/direct_gene_cna.R R/iGC.R R/data_hg19DBNM.R R/find_cna_driven_gene.R R/create_sample_desc.R R/faster_gene_cna.R R/create_gene_exp.R vignettes/Introduction.Rmd

vignettes/pics/analysis_workflow.png

man/iGC.Rd man/create_gene_cna.Rd man/direct_gene_cna.Rd man/create_gene_exp.Rd man/create_sample_desc.Rd man/hg19DBNM.Rd man/find_cna_driven_gene.Rd

inst/NEWS.Rd

inst/CITATION

inst/doc/Introduction.R inst/doc/Introduction.Rmd

inst/doc/Introduction.html

inst/extdata/sample_desc.csv

inst/extdata/GE/US82800149_251976012512_S01.tcga_level3.txt

inst/extdata/GE/US82800149_251976012261_S01.tcga_level3.txt

inst/extdata/GE/US82800149_251976012204_S01.tcga_level3.txt

inst/extdata/GE/US82800149_251976012510_S01.tcga_level3.txt

inst/extdata/GE/US82800149_251976012154_S01.tcga_level3.txt

inst/extdata/GE/US82800149_251976012205_S01.tcga_level3.txt

inst/extdata/GE/US82800149_251976012503_S01.tcga_level3.txt

inst/extdata/GE/US82800149_251976012264_S01.tcga_level3.txt

inst/extdata/GE/US82800149_251976012155_S01.tcga_level3.txt

inst/extdata/GE/US82800149_251976012200_S01.tcga_level3.txt

inst/extdata/GE/US82800149_251976012483_S01.tcga_level3.txt

inst/extdata/GE/US82800149_251976012504_S01.tcga_level3.txt

inst/extdata/GE/US82800149_251976012517_S01.tcga_level3.txt

inst/extdata/GE/US82800149_251976012487_S01.tcga_level3.txt

inst/extdata/GE/US82800149_251976012263_S01.tcga_level3.txt

inst/extdata/GE/US82800149_251976012210_S01.tcga_level3.txt

inst/extdata/CNA/B08_697166.hg19.txt

inst/extdata/CNA/C06_697142.hg19.txt

inst/extdata/CNA/A05_697032.hg19.txt

inst/extdata/CNA/C03_707088.hg19.txt

inst/extdata/CNA/C02_697152.hg19.txt

inst/extdata/CNA/C04_697074.hg19.txt

inst/extdata/CNA/B10_697116.hg19.txt

inst/extdata/CNA/B11_697062.hg19.txt

inst/extdata/CNA/B03_697186.hg19.txt

inst/extdata/CNA/B07_697190.hg19.txt

inst/extdata/CNA/A04_697150.hg19.txt

inst/extdata/CNA/B05_697036.hg19.txt

inst/extdata/CNA/A09_697146.hg19.txt

inst/extdata/CNA/C01_697154.hg19.txt

inst/extdata/CNA/B01_697160.hg19.txt

inst/extdata/CNA/A07_697200.hg19.txt

iGC documentation built on Nov. 8, 2020, 6:49 p.m.