tgirke/systemPipeRdata: systemPipeRdata: Workflow templates and sample data
systemPipeRdata is a helper package to generate with a single command NGS workflow templates that are intended to be used by its parent package systemPipeR. The latter is an environment for building end-to-end analysis pipelines with automated report generation for next generation sequence (NGS) applications such as RNA-Seq, RIBO-Seq, ChIP-Seq, VAR-Seq and many others. Detailed examples for using systemPipeRdata are given in systemPipeR's overview vignette.
Getting started
Browse package contents
Package details |
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| Author | Thomas Girke |
| Bioconductor views | Alignment ChIPSeq Coverage DataImport GeneExpression GeneSetEnrichment Genetics ImmunoOncology Infrastructure MethylSeq QualityControl RNASeq RiboSeq SNP Sequencing WorkflowStep |
| Maintainer | Thomas Girke <thomas.girke@ucr.edu> |
| License | Artistic-2.0 |
| Version | 2.1.1 |
| URL | https://github.com/tgirke/systemPipeRdata https://systempipe.org/ |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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