tgirke/systemPipeRdata: systemPipeRdata: Workflow templates and sample data

systemPipeRdata is a helper package to generate with a single command NGS workflow templates that are intended to be used by its parent package systemPipeR. The latter is an environment for building end-to-end analysis pipelines with automated report generation for next generation sequence (NGS) applications such as RNA-Seq, RIBO-Seq, ChIP-Seq, VAR-Seq and many others. Detailed examples for using systemPipeRdata are given in systemPipeR's overview vignette.

Getting started

Package details

AuthorThomas Girke
Bioconductor views Alignment ChIPSeq Coverage DataImport GeneExpression GeneSetEnrichment Genetics ImmunoOncology Infrastructure MethylSeq QualityControl RNASeq RiboSeq SNP Sequencing WorkflowStep
MaintainerThomas Girke <>
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
tgirke/systemPipeRdata documentation built on June 14, 2022, 12:28 a.m.