tgirke/systemPipeRdata: systemPipeRdata: NGS workflow templates and sample data

systemPipeRdata is a helper package to generate with a single command NGS workflow templates that are intended to be used by its parent package systemPipeR. The latter is an environment for building end-to-end analysis pipelines with automated report generation for next generation sequence (NGS) applications such as RNA-Seq, RIBO-Seq, ChIP-Seq, VAR-Seq and many others. Detailed examples for using systemPipeRdata are given in systemPipeR's overview vignette.

README.md ChIP-Seq Workflow Template Ribo-Seq Workflow Template RIBO-Seq Workflow Template RNA-Seq Workflow Template VAR-Seq Workflow Template VAR-Seq Workflow Template

Vignettes Man pages API and functions Files

Package details
Author	Thomas Girke
Bioconductor views	Alignment ChIPSeq Coverage DataImport GeneExpression GeneSetEnrichment Genetics Infrastructure MethylSeq QualityControl RNASeq SNP Sequencing
Maintainer	Thomas Girke <[email protected]>
License	Artistic-2.0
Version	1.9.1
URL	https://github.com/tgirke/systemPipeRdata
Package repository	View on GitHub
Installation	Install the latest version of this package by entering the following in R: `install.packages("devtools") library(devtools) install_github("tgirke/systemPipeRdata")`