patrickCNMartin/ChIPanalyser: ChIPanalyser: Predicting Transcription Factor Binding Sites

ChIPanalyser is a package to predict and understand TF binding by utilizing a statistical thermodynamic model. The model incorporates 4 main factors thought to drive TF binding: Chromatin State, Binding energy, Number of bound molecules and a scaling factor modulating TF binding affinity. Taken together, ChIPanalyser produces ChIP-like profiles that closely mimic the patterns seens in real ChIP-seq data.

Getting started

Package details

AuthorPatrick C.N.Martin & Nicolae Radu Zabet
Bioconductor views Alignment BiologicalQuestion ChIPSeq ChipOnChip Coverage DataImport PeakDetection SequenceMatching Sequencing Software Transcription WorkflowStep
MaintainerPatrick C.N. Martin <>
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
patrickCNMartin/ChIPanalyser documentation built on Nov. 24, 2022, 12:02 a.m.