Biocview "ChipOnChip"

GenoGAM

A GAM based framework for analysis of ChIP-Seq data

gstricker/fastGenoGAM

A GAM based framework for analysis of ChIP-Seq data

gstricker/GenoGAM

A GAM based framework for analysis of ChIP-Seq data

pmoulos/recoup

An R package for the creation of complex genomic profile plots

recoup

An R package for the creation of complex genomic profile plots

patrickCNMartin/ChIPanalyserDev

ChIPanalyser: Predicting Transcription Factor Binding Sites

ChIPanalyser

ChIPanalyser: Predicting Transcription Factor Binding Sites

patrickCNMartin/ChIPanalyser

ChIPanalyser: Predicting Transcription Factor Binding Sites

MatthiasLienhard/qsea

IP-seq data analysis and vizualization

qsea

IP-seq data analysis and vizualization

Genometric/rmspc

Multiple Sample Peak Calling

julaiti/MSPC

Multiple Sample Peak Calling: Using combined evidence from replicates to evaluate ChIP-seq peaks

Bohdan-Khomtchouk/geneXtendeR

Optimized Functional Annotation Of ChIP-seq Data

geneXtendeR

Optimized Functional Annotation Of ChIP-seq Data

Bohdan-Khomtchouk/geneXtendeR_keepme

Optimized Functional Annotation Of ChIP-seq Data

puma

Propagating Uncertainty in Microarray Analysis(including Affymetrix tranditional 3' arrays and exon arrays and Human Transcriptome Array 2.0)

SVM2CRM

SVM2CRM: support vector machine for cis-regulatory elements detections

guidmt/SVM2CRM

SVM2CRM: support vector machine for cis-regulatory elements detections

STAN

The Genomic STate ANnotation Package

profileplyr

Visualization and annotation of read signal over genomic ranges with profileplyr

RockefellerUniversity/profileplyr

Visualization and annotation of read signal over genomic ranges with profileplyr