julaiti/MSPC: Multiple Sample Peak Calling: Using combined evidence from replicates to evaluate ChIP-seq peaks

This packages implements set of functions to retrieve overlapped enriched regions across multiple replicates in parallel (a.k.a, pair-wise), statistical method for overlapped regions. simultaneous presence of an enriched regions in replicates experiment would justify a local decrease of the stringency criterion, leveraging on the principal that repeated evidence is compensating for weak evidence. This packages jointly analyzes the enriched regions of multiple replicates, distinguishing between biological and technical replicates, and accepting user defined parameters.

Getting started

Package details

AuthorJurat Shahidin
Bioconductor views ChIPSeq ChipOnChip Sequencing Software
MaintainerJurat Shahidin <juratbupt@gmail.com>
URL https://github.com/julaiti/MSPC/
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
julaiti/MSPC documentation built on Oct. 17, 2019, 9:44 p.m.