Files in julaiti/MSPC

Multiple Sample Peak Calling: Using combined evidence from replicates to evaluate ChIP-seq peaks

.Rbuildignore

.gitignore

.travis.yml

DESCRIPTION

MSPC.Rproj

NAMESPACE

NEWS.md R/FDR_stats.R R/MSPC_package.R R/denoise_ERs.R R/export_ERs.R R/getPlot.R R/readPeakFiles.R R/runMSPC.R R/utilities.R R/zzz.R README.md

inst/extdata/wgEncodeOpenChromDnaseK562G1phaseAlnRep1.bed

inst/extdata/wgEncodeOpenChromDnaseK562G1phaseAlnRep2.bed

inst/extdata/wgEncodeOpenChromDnaseK562G1phaseAlnRep3.bed

inst/extdata/wgEncodeOpenChromDnaseK562NabutAlnRep1.bed

inst/extdata/wgEncodeOpenChromDnaseK562NabutAlnRep2.bed

inst/extdata/wgEncodeSydhHistoneK562bH3k4me3bUcdAlnRep1.bed

inst/extdata/wgEncodeSydhHistoneK562bH3k4me3bUcdAlnRep2.bed

inst/extdata/wgEncodeSydhTfbsK562CmycStdAlnRep1.bed

inst/extdata/wgEncodeSydhTfbsK562CmycStdAlnRep2.bed

inst/extdata/wgEncodeSydhTfbsK562JundIggrabAlnRep1.bed

inst/extdata/wgEncodeSydhTfbsK562JundIggrabAlnRep2.bed

man/FDR_stats.Rd man/MSPC-package.Rd man/denoise_ERs.Rd man/export_ERs.Rd man/getPeakFile.Rd man/getPlot.Rd man/info.Rd man/readPeakFiles.Rd man/runMSPC.Rd

output/accuracy_plot.png

output/benchmark_plot.png

output/package_pipeline.jpg

tests/testthat.R tests/testthat/test_all.R vignettes/MSPC_User_Guide.Rmd

vignettes/bibliography.bib

vignettes/nature.csl

julaiti/MSPC documentation built on Oct. 17, 2019, 9:44 p.m.