qsea: IP-seq data analysis and vizualization

qsea (quantitative sequencing enrichment analysis) was developed as the successor of the MEDIPS package for analyzing data derived from methylated DNA immunoprecipitation (MeDIP) experiments followed by sequencing (MeDIP-seq). However, qsea provides several functionalities for the analysis of other kinds of quantitative sequencing data (e.g. ChIP-seq, MBD-seq, CMS-seq and others) including calculation of differential enrichment between groups of samples.

Package details

AuthorMatthias Lienhard, Lukas Chavez, Ralf Herwig
Bioconductor views ChIPSeq ChipOnChip CopyNumberVariation CpGIsland DNAMethylation DifferentialMethylation Normalization Preprocessing QualityControl Sequencing Visualization
MaintainerMatthias Lienhard <lienhard@molgen.mpg.de>
LicenseGPL (>=2)
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))


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qsea documentation built on Nov. 8, 2020, 8:28 p.m.