Biocview "Preprocessing"

A "corrective make-up" program for microarray chips
A correlation-based method for quality filtering of single-cell RNAseq data
Adaptive Robust Regression normalization for Illumina methylation data
Adjust for positional and batch effects using ComBat
Adjust for positional and batch effects using ComBat
A DownStream Chemo-Proteomics Analysis Pipeline
A DownStream Chemo-Proteomics Analysis Pipeline
A DownStream Chemo-Proteomics Analysis Pipeline
A fast scatterplot smoother suitable for microarray normalization
Affymetrix Quality Assessment and Analysis Tool
A function set for the Extrapolation Strategy (RMA+) and Extrapolation Averaging (RMA++) methods.
A generic R plugin dispatcher for BASE
A graphical interface designed to facilitate analysis of microarrays and miRNA/RNA-seq data on laptops
ALS for the Automatic Chemical Exploration of mixtures
ALS for the Automatic Chemical Exploration of mixtures
alternative CDF environments (aka probeset mappings)
A model for network-based prioritisation of genes
A model for network-based prioritisation of genes
Analysis of Agilent Microarray Data [draft]
Analysis of CAGE (Cap Analysis of Gene Expression) sequencing data for precise mapping of transcription start sites and promoterome mining
Analysis of CAGE (Cap Analysis of Gene Expression) sequencing data for precise mapping of transcription start sites and promoterome mining
Analysis of CAGE (Cap Analysis of Gene Expression) sequencing data for precise mapping of transcription start sites and promoterome mining
Analysis of Cap Analysis of Gene Expression (CAGE) data using Bioconductor
Analysis of Cap Analysis of Gene Expression (CAGE) data using Bioconductor
Analysis of cell-based screens - revised version of cellHTS
Analysis of Chromosome Conformation Capture and Next-generation Sequencing (3C-seq)
Analysis of Chromosome Conformation Capture and Next-generation Sequencing (3C-seq)
Analysis of Chromosome Conformation Capture and Next-generation Sequencing (3C-seq)
Analysis of high-throughput microscopy-based screens
Analysis of high-throughput sequencing data processed by restriction enzyme digestion
Analysis of Illumina microarray data [A DRAFT - TRUE]
Analysis of Large Affymetrix Microarray Data Sets
Analysis of Large Affymetrix Microarray Data Sets
Analyze and correct probe positional bias in microarray data due to RNA degradation
Analyze Illumina Infinium DNA methylation arrays
Analyze Illumina Infinium DNA methylation arrays
Analyze Illumina Infinium DNA methylation arrays
An Easy-to-use Systematic pipeline for ATACseq data analysis
An Easy-to-use Systematic pipeline for ATACseq data analysis
An Easy-to-use Systematic pipeline for ATACseq data analysis
An Easy-to-use Systematic pipeline for ATACseq data analysis
An Easy-to-use Systematic pipeline for ATACseq data analysis
An Interactive Consensus Clustering Framework for Multi-platform Data Analysis
An Interactive Consensus Clustering Framework for Multi-platform Data Analysis
An R Object-oriented Microarray Analysis package
An R package for RNA visualization and analysis
An R package for the analysis and result reporting of RNA-Seq data by combining multiple statistical algorithms
An R package for the analysis and result reporting of RNA-Seq data by combining multiple statistical algorithms
An R package for the analysis and result reporting of RNA-Seq data by combining multiple statistical algorithms
An R package for the analysis and result reporting of RNA-Seq data by combining multiple statistical algorithms.
An R package for the analysis and result reporting of RNA-Seq data by combining multiple statistical algorithms.
An R package for the analysis and result reporting of RNA-Seq data by combining multiple statistical algorithms.
An R package for the analysis and result reporting of RNA-Seq data by combining multiple statistical algorithms.
An R package for the creation of complex genomic profile plots
An R package for the creation of complex genomic profile plots
An R package of Data Importing, Processing and Analysis for Opera High Content Screening System
An R Wrapper for Bowtie2 and AdapterRemoval
a package for checking high-throughput genomic data redundancy in meta-analysis
A package for the analysis of GC-MS metabolite profiling data
A package for the analysis of GC-MS metabolite profiling data
A package for the clinical proteomic profiling data analysis
ascend - Analysis of Single Cell Expression, Normalisation, and Differential expression
A Software Suite for Shallow Sequencing Copy Number Analysis
A test for when to use quantile normalization
A test for when to use quantile normalization
A tool for creating and analysing DNA barcodes used in Next Generation Sequencing multiplexing experiments
A Tool for Optimizing Combinations of DNA Barcodes Used in Multiplexed Experiments on Next Generation Sequencing Platforms
A Tool for Optimizing Combinations of DNA Barcodes Used in Multiplexed Experiments on Next Generation Sequencing Platforms
A tool for unsupervised projection of single cell RNA-seq data
A tool for unsupervised projection of single cell RNA-seq data
a tool to perform statistical analysis of differential protein expression for quantitative proteomics data.
a tool to perform statistical analysis of differential protein expression for quantitative proteomics data.
Augmented functionality for analysis of epigenomic variance
Automated analysis of high-throughput qPCR data
Automated spectraL Processing System for NMR
Background Adjustment Using Sequence Information
Bandwise normalization and batch correction of Hi-C data
Bandwise normalization and batch correction of Hi-C data
Base Functions for Bioinformatics
Base Functions for Bioinformatics
Base Functions for Bioinformatics
Base Functions for Bioinformatics
Base Functions for Bioinformatics
Basic graphic utilities for visualization of genomic data.
Basic graphic utilities for visualization of genomic data.
Batch Effects Quality Control Software
BeadArray Specific Methods for Illumina Methylation and Expression Microarrays
Bias Awared Peak Calling and Quantification for MeRIP-Seq
Bias Awared Peak Calling and Quantification for MeRIP-Seq
Bias Awared Peak Calling and Quantification for MeRIP-Seq
Big multivariate data plotted interactively
Big multivariate data plotted interactively
Big multivariate data plotted interactively
Binomial test for Hi-C data analysis
Binomial test for Hi-C data analysis
Bioinformatics pipelines based on Rcwl
Bioinformatics pipelines based on Rcwl
Calibration model for estimating absolute expression levels from microarray data
Calling aberrations for array CGH tumor profiles.
Calling aberrations for array CGH tumor profiles.
CB2: A cluster-based approach for distinguishing cells from background barcodes in 10x Genomics data
CDF Environment Maker
CGH Micro-Array NORmalization
C++ infrastructure for representing and interacting with the gated cytometry
Clustering of MS2 Spectra for Metabolite Identification
Clustering of MS2 Spectra for Metabolite Identification
CommunityAMARETTO: A Computational Tool for the Discovery of Shared and Distinct Regulatory Mechanisms Across Biological Systems
Comprehensive Pipeline for Analyzing and Visualizing Array-Based CGH Data
Comprehensive Pipeline for Analyzing and Visualizing Array-Based CGH Data
Compute cell-type specific enrichments with high resolution
Conditional quantile normalization
Connect high throughput Array data from different platforms
Convenience package for solving some liftover challenges
Convenience package for solving some liftover challenges
Convert miRNA Names to Different miRBase Versions
Convert miRNA Names to Different miRBase Versions
Convert the GatingSet from Boost serialization to protocol buffer format
Copy-Number Analysis of Large Microarray Data Sets
Copy-Number Analysis of Large Microarray Data Sets
Copy number information from ChIP_seq using off-target reads off-target reads
Copy number information from targeted sequencing using off-target reads
Copy number information from targeted sequencing using off-target reads
Copy number prediction with correction for GC and mappability bias for HTS data
Copy number prediction with correction for GC and mappability bias for HTS data
Copy number prediction with correction for GC and mappability bias for HTS data
Core Methods and Classes Used by 'aroma.*' Packages Part of the Aroma Framework
Core Methods and Classes Used by 'aroma.*' Packages Part of the Aroma Framework
Correction for natural isotope abundance and tracer purity in MS and MS/MS data from stable isotope labeling experiments
Correction for natural isotope abundance and tracer purity in MS and MS/MS data from stable isotope labeling experiments
Correction of batch effects in DNA methylation data
Correction of batch effects in DNA methylation data
Correspondence Analysis for Single Cell Data
Count summarization and normalization for RNA-Seq data
Cross Platform Meta-Analysis of Microarray Data
Cross Platform Meta-Analysis of Microarray Data
Cytometry dATa anALYSis Tools
Cytometry dATa anALYSis Tools
Data-driven normalization strategies for high-throughput qPCR data.
Data preprocessing and quality control for Illumina HumanMethylation450 and MethylationEPIC BeadChip
Data preprocessing and quality control for Illumina HumanMethylation450 and MethylationEPIC BeadChip
Data preprocessing and quality control for Illumina HumanMethylation450 and MethylationEPIC BeadChip (USC version)
DeepBlueR
DeepBlueR
DeepBlueR
DEsingle for detecting three types of differential expression in single-cell RNA-seq data
DEsingle for detecting three types of differential expression in single-cell RNA-seq data
Detecting hidden batch factors through data adaptive adjustment for biological effects
Detecting hidden batch factors through data adaptive adjustment for biological effects
Detecting hidden batch factors through data adaptive adjustment for biological effects
Detecting hidden batch factors through data adaptive adjustment for biological effects
Detection of focal aberrations in DNA copy number data
Differential Analyis of Hi-C Data
Differential Analysis of Hi-C Data
DNA IP-seq data analysis
DNA IP-seq data analysis
DNA IP-seq data analysis
DNA IP-seq data analysis
DNA IP-seq data analysis
Efficient algorithms for DNA methylation
Efficient compression and analysis of Hi-C Data
Empirical Bayes estimate of block diagonal covariance matrices
Empirical Bayes estimate of block diagonal covariance matrices
Enhanced copy-number variation analysis using Illumina DNA methylation arrays
Estimate Pairwise Interactions from multidimensional features
Excluding host reads from xenograft sequencing data
Exploratory analysis for two-color spotted microarray data
Exploratory Data Analysis and Normalization for RNA-Seq
Exploratory Data Analysis and Normalization for RNA-Seq
FARMS - Factor Analysis for Robust Microarray Summarization
Fast Methylome-Wide Association Study Pipeline for Enrichment Platforms
Fast Methylome-Wide Association Study Pipeline for Enrichment Platforms
Fast treatment of MACSQuantify FACS data
Fast treatment of MACSQuantify FACS data
Filter replicated high-throughput transcriptome sequencing data
Filter replicated high-throughput transcriptome sequencing data
Finding differentially expressed unannotated genomic regions from RNA-seq data
Finding differentially expressed unannotated genomic regions from RNA-seq data
Flexible, isoform-level differential expression analysis
Flexible, isoform-level differential expression analysis
Flexible, isoform-level differential expression analysis
Frozen RMA and Barcode
Frozen RMA and Barcode
Frozen RMA Tools
Frozen RMA Tools
Functions to conduct quality control analysis in methylation data
Functions to conduct quality control analysis in methylation data
Functions to handle cDNA microarray data, including several methods of data analysis
Functions to process LM-PCR reads from 454/Illumina data
Functions to process LM-PCR reads from 454/Illumina data
Functions used to preprocess datasets stored in BioDataome
Gaussian Process Ranking and Estimation of Gene Expression time-series
Gaussian Process Ranking and Estimation of Gene Expression time-series
geneChip Analysis Package
Gene network reconstruction
Gene-Specific Phenotype EstimatoR
Gene-Specific Phenotype EstimatoR
Genotype Calling (CRLMM) and Copy Number Analysis tool for Affymetrix SNP 5.0 and 6.0 and Illumina arrays
Genotype Calling (CRLMM) and Copy Number Analysis tool for Affymetrix SNP 5.0 and 6.0 and Illumina arrays
Genotype Calling (CRLMM) and Copy Number Analysis tool for Affymetrix SNP 5.0 and 6.0 and Illumina arrays.
Genotype Calling (CRLMM) and Copy Number Analysis tool for Affymetrix SNP 5.0 and 6.0 and Illumina arrays.
GPA (Genetic analysis incorporating Pleiotropy and Annotation)
GPA (Genetic analysis incorporating Pleiotropy and Annotation)
graph-GPA: A graphical model for prioritizing GWAS results and investigating pleiotropic architecture
Graphical User Interface for IsoCorrectoR
Graphical User Interface for IsoCorrectoR
Graphical user interface for OLIN
Graphics Toolbox for Assessment of Affymetrix Expression Measures
Grey Lists -- Mask Artefact Regions Based on ChIP Inputs
GUI for limma Package with Affymetrix Microarrays
GUI for limma Package With Two Color Microarrays
Handle Illumina methylation data
Handle Illumina methylation data
Hierarchical Gating Pipeline for flow cytometry data
Hierarchical Gating Pipeline for flow cytometry data
High-Throughput Sequence Analysis using the Aroma Framework
Hits Selection for Synthetic Lethal RNAi Screen Data
HIV Annotation
Identification of CTC in Blood Streams
Identify Differentially Expressed Genes from RNA-seq data
Identifying differential DNA loops from chromatin topology data
Identifying differential DNA loops from chromatin topology data
Illumina 450 methylation array normalization and metrics
Illumina 450 methylation array normalization and metrics
Illumina methylation array analysis for large experiments
Illumina methylation array analysis for large experiments
ImagingAMARETTO: tools for interpreting multi-omics networks for relevance to clinical outcomes and radiographic and histopathology imaging-derived biomarkers
Implementation of the differential equation model described in "Dynamical modelling of phenotypes in a genome-wide RNAi live-cell imaging assay"
Import and summarize transcript-level estimates for transcript- and gene-level analysis
Import and summarize transcript-level estimates for transcript- and gene-level analysis
Importing a tRNAscan-SE result file as GRanges object
Importing a tRNAscan-SE result file as GRanges object
Importing a tRNAscan-SE result file as GRanges object
Infrastructure for representing and interacting with gated and ungated cytometry data sets.
Infrastructure for representing and interacting with gated and ungated cytometry data sets.
In-Silico Annotation of Doublets for Single Cell RNA Sequencing Data
In-Silico Annotation of Doublets for Single Cell RNA Sequencing Data
integrated Bayesian Modeling of eQTL data
integrated Bayesian Modeling of eQTL data
Interactive visualization for Illumina methylation arrays
Interactive visualization for Illumina methylation arrays
IP-seq data analysis and vizualization
IP-seq data analysis and vizualization
Iteratively Adjusted Surrogate Variable Analysis
Iteratively Adjusted Surrogate Variable Analysis
Iteratively Adjusted Surrogate Variable Analysis
KnowSeq R/Bioc package: Beyond the traditional Transcriptomic pipeline
KnowSeq R/Bioc package: Beyond the traditional Transcriptomic pipeline
Light-Weight Methods for Normalization and Visualization of Microarray Data using Only Basic R Data Types
Light-Weight Methods for Normalization and Visualization of Microarray Data using Only Basic R Data Types
Light-Weight Methods for Normalization and Visualization of Microarray Data using Only Basic R Data Types
Linear Model of background subtraction and the Langmuir isotherm
Linear Models for Microarray Data
Linear Models for Microarray Data
LMGene Software for Data Transformation and Identification of Differentially Expressed Genes in Gene Expression Arrays
LVS normalization for Agilent miRNA data
Manipulation of Codelink microarray data
MBCB (Model-based Background Correction for Beadarray)
Mean/Median-balanced quantile normalization
Mean/Median-balanced quantile normalization
Mean/Median-balanced quantile normalization
MetaCyto: A package for meta-analysis of cytometry data
MetaCyto: A package for meta-analysis of cytometry data
Methods for Affymetrix Oligonucleotide Arrays
Methods for fitting probe-level models
Methylation array and sequencing spatial analysis methods
Methylation array and sequencing spatial analysis methods
Methylation Enriched LOci Normalization (MELON) for genome-wide DNA methylation experiments
MethyLiution: A QC Pipeline For Methylation Data
MiChip Parsing and Summarizing Functions
Microarray Analysis of Differential Expression
Microarray Analysis tool
Microarray QA and statistical data analysis for Applied Biosystems Genome Survey Microrarray (AB1700) gene expression data.
Microarray Spot Segmentation and Gridding for Blocks of Microarray Spots
Multivariate Information Criteria to identify important predictors in high dimensional multivariate regression
Multivariate Information Criteria to identify important predictors in high dimensional multivariate regression
Murine Palate miRNA Expression Analysis
Muscle Epigenetic Age Test
Network smoothing for scRNAseq
Network smoothing for scRNAseq
Non-detects in qPCR data
Non-detects in qPCR data
Non-detects in qPCR data
Normalization and difference calling in ChIP-seq data
Normalization and difference calling in ChIP-seq data
Normalization and reporting of Illumina SNP bead arrays
Normalization of array CGH data with imbalanced aberrations.
Normalization Procedure for Infinium HumanMethylation450 BeadChip Kit
Normalization Procedure for Infinium HumanMethylation450 BeadChip Kit
Optimized local intensity-dependent normalisation of two-color microarrays
Package analyse 4C sequencing data
Parallelized preprocessing methods for Affymetrix Oligonucleotide Arrays
Peak-based selection of high quality cytometry data
Perform a maximum contrast projection of 3D images along the z-dimension into 2D
Perform a maximum contrast projection of 3D images along the z-dimension into 2D
pipeline for single cell RNA-seq data analysis
pipeline for single cell RNA-seq data analysis
PKG_TITLE
Platform for integrative analysis of omics data
Platform for integrative analysis of omics data
Poisson Models for Quantifying DNA Copy-number from FISH Images of Tissue Sections
Poisson Models for Quantifying DNA Copy-number from FISH Images of Tissue Sections
Post-normalization of total copy numbers
Post-normalization of total copy numbers
Precise and Accurate Automated Removal of Outlier Events and Flagging of Files Based on Time Versus Fluorescence Analysis
Predict gene network using an Ordinary Differential Equation (ODE) based method
Prediction of pri-miRNA Transcription Start Site
Prediction of pri-miRNA Transcription Start Site
Pre-process 1H-NMR FID signals
Pre-process 1H-NMR FID signals
Pre-process 1H-NMR FID signals
Pre-process 1H-NMR FID signals
Pre-process 1H-NMR FID signals
Preprocessing of FIA-HRMS data
Preprocessing of FIA-HRMS data
Preprocessing of Illumina Infinium 450K data
Preprocessing of spectra data from high resolution mass spectrometry
Pre-processing PTR-TOF-MS Data
Preprocessing tools for oligonucleotide arrays
Preprocessing tools for oligonucleotide arrays
Preprocessing tools for oligonucleotide arrays
Preprocessing tools for oligonucleotide arrays.
Probe Dependent Nearest Neighbours (PDNN) for the affy package
Probe region expression estimation for RNA-seq data for improved microarray comparability
Processing and Analysis of Affymetrix Oligonucleotide Arrays including Exon Arrays, Whole Genome Arrays and Plate Arrays
Processing and Differential Expression Analysis of Agilent microRNA chips
Propagating Uncertainty in Microarray Analysis(including Affymetrix tranditional 3' arrays and exon arrays and Human Transcriptome Array 2.0)
Provides a GUI for DAPAR
Provides a GUI for DAPAR
Provides a GUI for DAPAR
QC Pipeline and Data Analysis Tools for High-Dimensional Illumina mRNA Expression Data
Quality assessment and low-level analysis for Illumina BeadArray data
Quality assessment and low-level analysis for Illumina BeadArray data
Quality Control for Single-Cell RNA-seq Data
Quality Control for Single-Cell RNA-seq Data
Quality Control for Single-Cell RNA-seq Data
Quality metrics and data processing methods for NanoString mRNA gene expression data
Quantification and Visulization of Variations of Splicing in Population
Quantification and Visulization of Variations of Splicing in Population
Quantification and Visulization of Variations of Splicing in Population
Quantification and Visulization of Variations of Splicing in Population
Quantify and Annotate Short Reads in R
Quantify and Annotate Short Reads in R
Quantify and interpret divers of variation in multilevel gene expression experiments
Quantify and interpret divers of variation in multilevel gene expression experiments
Quantitative DNA Sequencing for Chromosomal Aberrations
Quantitative DNA Sequencing for Chromosomal Aberrations
Quick Read Quality Control
Quick Read Quality Control
Random Rotation Methods for High Dimensional Data with Batch Structure
Random Rotation Methods for High Dimensional Data with Batch Structure
RBioinf
Rcpp Integration Surrogate Variable Analysis
Recalibrating Quality Of Nucleotides
Regulatory Network Inference and Driver Gene Evaluation using Integrative Multi-Omics Analysis and Penalized Regression
Regulatory Network Inference and Driver Gene Evaluation using Integrative Multi-Omics Analysis and Penalized Regression
Regulatory Network Inference and Driver Gene Evaluation using Integrative Multi-Omics Analysis and Penalized Regression
Removal of unwanted variation for gene-gene correlations and related analysis.
Remove Unwanted Variation from RNA-Seq Data
Remove Unwanted Variation from RNA-Seq Data
Repetitive Element Methylation Prediction
Repetitive Element Methylation Prediction
R functions for the normalization of Exiqon miRNA array data
R implementation from MAT program to normalize and analyze tiling arrays and ChIP-chip data.
R Investigation of ChIP-chip Oligoarrays
RnBeads
Robust Analysis of MicroArrays
Routines that don't belong to the core flow packages yet.
R package for calling CNV from Illumina 450k methylation microarrays
R package for combining multiple scans
R Package for Processing High Content Screening data
R Package for Processing High Content Screening data
R Package for Processing High Content Screening data
RPA: Robust Probabilistic Averaging for probe-level analysis
RPA: Robust Probabilistic Averaging for probe-level analysis
samExploreR package: high-performance read summarisation to count vectors with avaliability of sequencing depth reduction simulation
samExploreR package: high-performance read summarisation to count vectors with avaliability of sequencing depth reduction simulation
sangeranalyseR: a suite of functions for the analysis of Sanger sequence data in R
scDblFinder
scDblFinder
scRecover for imputation of single-cell RNA-seq data
scRecover for imputation of single-cell RNA-seq data
scRecover for imputation of single-cell RNA-seq data
Segmentation, normalisation and processing of aCGH data
SEQprocess : a modularized and customizable pipeline framework for NGS processing in R package.
ShinyEPICO!
Simple tiling array analysis of Affymetrix ChIP-chip data
Simplified RNA-Seq Analysis Pipeline
Single-cell analysis toolkit for gene expression data in R
Single-Cell Analysis Toolkit for Gene Expression Data in R
Single-Cell Analysis Toolkit for Gene Expression Data in R
Single Cell Overview of Normalized Expression data
Single Cell Overview of Normalized Expression data
Single Cell RNA-Seq UMI Filtering Facilitator (scruff)
Single Cell RNA-Seq UMI Filtering Facilitator (scruff)
Single Cell RNA-Seq UMI Filtering Facilitator (scruff)
Single Cell RNA-Seq UMI Filtering Facilitator (scruff)
Single Cell RNA-Seq UMI Filtering Facilitator (scruff)
Single Cell RNA-Seq UMI Filtering Facilitator (scruff)
Single-channel array normalization (SCAN) and Universal exPression Codes (UPC)
SiRNA correction for seed mediated off-target effect
Smooth quantile normalization
Smooth quantile normalization
Smooth quantile normalization
Soft clustering of time series gene expression data
Spatial and intensity based normalization of cDNA microarray data based on robust neural nets
Spatial Transcriptomics Analysis
Spatial Transcriptomics Analysis
Statistical analysis of high-throughput RNAi screens
Statistical Analysis of Molecular Profiles
Statistical Analysis of Molecular Profiles
Statistical analysis of peptide microarrays
Statistical analysis of peptide microarrays
Statistical analysis of sequins
Statistical analysis of sequins
Statistical Analysis of the GeneChip
Statistical Inference of Associations between Microbial Communities And host phenoTypes
Statistical Inference of Associations between Microbial Communities And host phenoTypes
Statistical Inference of Associations between Microbial Communities And host phenoTypes
Statistics and dIagnostic Graphs for HTS
Statistics and dIagnostic Graphs for HTS
Stepwise normalization functions for cDNA microarrays
Subread Sequence Alignment and Counting for R
Suite of Functions for Pooled Crispr Screen QC and Analysis
Suite of Functions for Pooled Crispr Screen QC and Analysis
Suite of Functions for Pooled Crispr Screen QC and Analysis
Supervised Normalization of Microarrays
Supervised Normalization of Microarrays
Surrogate Variable Analysis
Surrogate Variable Analysis
Survival analysis for gene signatures
SVM2CRM: support vector machine for cis-regulatory elements detections
SynMut: Designing Synonymously Mutated Sequences with Different Genomic Signatures
SynMut: Designing Synonymously Mutated Sequences with Different Genomic Signatures
TCGA utility functions for data management
TCGA utility functions for data management
TCGA utility functions for data management
TCGA utility functions for data management
The Cancer Genome Atlas Data Integration
The Cancer Genome Atlas Data Integration
The GASSCO method for correcting for slide-dependent gene-specific dye bias
The removal of batch effects from datasets using a PCA and constrained optimisation based technique
The removal of batch effects from datasets using a PCA and constrained optimisation based technique
This package was built to cluster gene expression data using the Gaussian Infinite Mixture Model.
Tidy Meta Profiles using Bioconductor and the Tidyverse
Tools For Analyzing Illumina Infinium DNA Methylation Arrays
Tools For Analyzing Illumina Infinium DNA Methylation Arrays
Tools for Diagnostics and Corrections of Batch Effects in Proteomics
Tools for Diagnostics and Corrections of Batch Effects in Proteomics
Tools for HELP data analysis
Tools for microbiome analysis
Tools for qPLEX-RIME data analysis
Tools for qPLEX-RIME data analysis
Tools for the Differential Analysis of Proteins Abundance with R
Tools for the Differential Analysis of Proteins Abundance with R
Tools for the Differential Analysis of Proteins Abundance with R
Tools for the preprocessing and analysis of the Illumina microarrays on the detector (bead) level
Tools to assess and compare miRNA expression estimatation methods
Tools to assess and compare miRNA expression estimatation methods
Tools to assess and compare miRNA expression estimatation methods
Transcript abundance linear modeling from compressed coverage information
Transcription Start Site Identification
Transcript mapping with high-density oligonucleotide tiling arrays
Transcriptomic Ovarian Cancer Datasets
Transcriptomic Ovarian Cancer Datasets
Transcript Quantification Import with Automatic Metadata
Transcript Quantification Import with Automatic Metadata
Transform and Filter SWATH Data for Statistical Packages
Transform and Filter SWATH Data for Statistical Packages
Translational control assessment from ribosome footprint and total RNA libraries
UMI4Cats: Processing, analysis and visualization of UMI-4C chromatin contact data
Variance stabilization and calibration for microarray data
Very simple high level analysis of Affymetrix data
Visualize artificial correlation in microarray data
Visualize Intensities Produced by Illumina's Human Methylation 450k BeadChip
What the Package Does (One Line, Title Case)
What the Package Does (One Line, Title Case)
YARN: Robust Multi-Condition RNA-Seq Preprocessing and Normalization
YARN: Robust Multi-Condition RNA-Seq Preprocessing and Normalization
You Only Lookup One (small part of an otherwise large matrix)
You Only Lookup One (small part of an otherwise large matrix)