covEB: Empirical Bayes estimate of block diagonal covariance matrices
Version 1.2.0

Using bayesian methods to estimate correlation matrices assuming that they can be written and estimated as block diagonal matrices. These block diagonal matrices are determined using shrinkage parameters that values below this parameter to zero.

AuthorC. Pacini
Bioconductor views Bayesian GeneExpression Microarray Preprocessing RNASeq Software StatisticalMethod
Date of publicationNone
MaintainerC. Pacini <clarepacini@gmail.com>
LicenseGPL-3
Version1.2.0
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("covEB")

Getting started

Package overview

Popular man pages

covEB: Empirical Bayes estimate of block diagonal correlation matrix
covEB-package: Empirical Bayes estimate of block diagonal covariance...
EBsingle: Empirical Bayes estimate of block diagonal correlation matrix
See all...

All man pages Function index File listing

Man pages

covEB: Empirical Bayes estimate of block diagonal correlation matrix
covEB-package: Empirical Bayes estimate of block diagonal covariance...
EBsingle: Empirical Bayes estimate of block diagonal correlation matrix

Functions

AicN Source code
AicW Source code
EBEMWishart Source code
EBWishartc Source code
EBWishsingle Source code
EBsingle Man page Source code
SelThresh Source code
covEB Man page Source code
covEB-package Man page

Files

DESCRIPTION
NAMESPACE
R
R/EBsingle.R
R/covEB-internal.R
R/covEB.R
build
build/partial.rdb
build/vignette.rds
inst
inst/doc
inst/doc/covEB.R
inst/doc/covEB.Rnw
inst/doc/covEB.pdf
man
man/EBsingle.Rd
man/covEB-package.Rd
man/covEB.Rd
vignettes
vignettes/covEB.Rnw
covEB documentation built on May 20, 2017, 10:04 p.m.