This package builds on sangerseqR to allow users to create contigs from collections of Sanger sequencing reads. It provides a wide range of options for a number of commonly-performed actions including read trimming, detecting secondary peaks, and detecting indels using a reference sequence. All parameters can be adjusted interactively either in R or in the associated Shiny applications. There is extensive online documentation, and the package can outputs detailed HTML reports, including chromatograms.
|Author||Rob Lanfear <email@example.com>, Kuan-Hao Chao <firstname.lastname@example.org>|
|Bioconductor views||Alignment GUI Genetics Preprocessing QualityControl SangerSeq Sequencing Visualization|
|Maintainer||Kuan-Hao Chao <email@example.com>|
|Package repository||View on GitHub|
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