roblanf/sangeranalyseR: sangeranalyseR: a suite of functions for the analysis of Sanger sequence data in R

This package builds on sangerseqR to allow users to create contigs from collections of Sanger sequencing reads. It provides a wide range of options for a number of commonly-performed actions including read trimming, detecting secondary peaks, and detecting indels using a reference sequence. All parameters can be adjusted interactively either in R or in the associated Shiny applications. There is extensive online documentation, and the package can outputs detailed HTML reports, including chromatograms.

Getting started

Package details

AuthorRob Lanfear <rob.lanfear@gmail.com>, Kuan-Hao Chao <ntueeb05howard@gmail.com>
Bioconductor views Alignment GUI Genetics Preprocessing QualityControl SangerSeq Sequencing Visualization
MaintainerKuan-Hao Chao <ntueeb05howard@gmail.com>
LicenseGPL-2
Version1.1.2
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("roblanf/sangeranalyseR")
roblanf/sangeranalyseR documentation built on May 13, 2021, 4:15 p.m.