SangerRead-class-MakeBaseCalls: MakeBaseCalls
In roblanf/sangeranalyseR: sangeranalyseR: a suite of functions for the analysis of Sanger sequence data in R
SangerRead-class-MakeBaseCalls R Documentation
MakeBaseCalls
Description
A SangerRead method which does base calling on SangerRead instance
Usage
## S4 method for signature 'SangerRead'
MakeBaseCalls(object, signalRatioCutoff = 0.33)
Arguments
object
A SangerRead S4 instance.
signalRatioCutoff
The ratio of the height of a secondary peak to a primary peak. Secondary peaks higher than this ratio are annotated. Those below the ratio are excluded. The default value is 0.33.
Value
A SangerRead instance.
Examples
data("sangerReadFData")
newSangerReadFData <- MakeBaseCalls(sangerReadFData, signalRatioCutoff = 0.22)
roblanf/sangeranalyseR documentation built on April 15, 2024, 12:44 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| SangerRead-class-MakeBaseCalls | R Documentation |
MakeBaseCalls
Description
A SangerRead method which does base calling on SangerRead instance
Usage
## S4 method for signature 'SangerRead'
MakeBaseCalls(object, signalRatioCutoff = 0.33)
Arguments
object |
A SangerRead S4 instance. |
signalRatioCutoff |
The ratio of the height of a secondary peak to a primary peak. Secondary peaks higher than this ratio are annotated. Those below the ratio are excluded. The default value is |
Value
A SangerRead instance.
Examples
data("sangerReadFData")
newSangerReadFData <- MakeBaseCalls(sangerReadFData, signalRatioCutoff = 0.22)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.