launchApp: Method launchApp

In roblanf/sangeranalyseR: sangeranalyseR: a suite of functions for the analysis of Sanger sequence data in R

Method launchApp

Description

A method which launches Shiny application of the SangerContig and SangerAlignment instance.

Usage

launchApp(object, outputDir = NULL, colors = "default")

Arguments

object	A SangerContig or SangerAlignment S4 instance.
outputDir	The output directory of the saved new SangerContig or SangerAlignment S4 instance.
colors	A vector for users to set the colors of (A, T, C, G, else). There are three options for users to choose from. 1. "default": (green, blue, black, red, purple). 2. "cb_friendly": ((0, 0, 0), (199, 199, 199), (0, 114, 178), (213, 94, 0), (204, 121, 167)). 3. Users can set their own colors with a vector with five elements.

Value

A SangerContig or SangerAlignment object.

Author(s)

Kuan-Hao Chao

Examples

data(sangerContigData)
data(sangerAlignmentData)
## Not run: 
launchApp(sangerContigData)
launchApp(sangerContigData, colors="cb_friendly")
launchApp(sangerAlignmentData)
launchApp(sangerAlignmentData, colors="cb_friendly")
## End(Not run)

roblanf/sangeranalyseR documentation built on April 15, 2024, 12:44 a.m.