TurboNorm: A fast scatterplot smoother suitable for microarray normalization

A fast scatterplot smoother based on B-splines with second-order difference penalty. Functions for microarray normalization of single-colour data i.e. Affymetrix/Illumina and two-colour data supplied as marray MarrayRaw-objects or limma RGList-objects are available.

Author
Maarten van Iterson and Chantal van Leeuwen
Date of publication
None
Maintainer
Maarten van Iterson <mviterson@gmail.com>
License
LGPL
Version
1.22.0
URLs

View on Bioconductor

Man pages

methylation
CpG island DNA methylation array data
normalize.pspline
Functions for single-colour microarray data normalization...
panel.pspline
Panel function for adding a P-spline smoothed curves to a...
pspline
Function for two-colour microarray data normalization using...
turbonorm-package
A fast scatterplot smoother with applications for microarray...
turbotrend
turbotrend: a fast scatterplot smoother

Files in this package

TurboNorm/DESCRIPTION
TurboNorm/NAMESPACE
TurboNorm/NEWS
TurboNorm/R
TurboNorm/R/normalize.AffyBatch.pspline.R
TurboNorm/R/normalize.pspline.R
TurboNorm/R/panel.pspline.R
TurboNorm/R/pspline.R
TurboNorm/R/turbotrend.R
TurboNorm/build
TurboNorm/build/vignette.rds
TurboNorm/data
TurboNorm/data/methylation.RData
TurboNorm/inst
TurboNorm/inst/CITATION
TurboNorm/inst/doc
TurboNorm/inst/doc/turbonorm.R
TurboNorm/inst/doc/turbonorm.Rnw
TurboNorm/inst/doc/turbonorm.pdf
TurboNorm/man
TurboNorm/man/methylation.Rd
TurboNorm/man/normalize.pspline.Rd
TurboNorm/man/panel.pspline.Rd
TurboNorm/man/pspline.Rd
TurboNorm/man/turbonorm-package.Rd
TurboNorm/man/turbotrend.Rd
TurboNorm/src
TurboNorm/src/Rinit.c
TurboNorm/src/binners.c
TurboNorm/vignettes
TurboNorm/vignettes/turbonorm.Rnw
TurboNorm/vignettes/turbonorm.bib