TurboNorm: A fast scatterplot smoother suitable for microarray normalization
Version 1.24.0

A fast scatterplot smoother based on B-splines with second-order difference penalty. Functions for microarray normalization of single-colour data i.e. Affymetrix/Illumina and two-colour data supplied as marray MarrayRaw-objects or limma RGList-objects are available.

AuthorMaarten van Iterson and Chantal van Leeuwen
Bioconductor views CpGIsland DNAMethylation MethylationArray Microarray Normalization OneChannel Preprocessing TwoChannel
Date of publicationNone
MaintainerMaarten van Iterson <mviterson@gmail.com>
LicenseLGPL
Version1.24.0
URL http://www.humgen.nl/MicroarrayAnalysisGroup.html
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("TurboNorm")

Popular man pages

methylation: CpG island DNA methylation array data
normalize.pspline: Functions for single-colour microarray data normalization...
panel.pspline: Panel function for adding a P-spline smoothed curves to a...
pspline: Function for two-colour microarray data normalization using...
turbonorm-package: A fast scatterplot smoother with applications for microarray...
turbotrend: turbotrend: a fast scatterplot smoother
See all...

All man pages Function index File listing

Man pages

methylation: CpG island DNA methylation array data
normalize.pspline: Functions for single-colour microarray data normalization...
panel.pspline: Panel function for adding a P-spline smoothed curves to a...
pspline: Function for two-colour microarray data normalization using...
turbonorm-package: A fast scatterplot smoother with applications for microarray...
turbotrend: turbotrend: a fast scatterplot smoother

Functions

DemmlerReinschBasis Source code
TurboNorm-package Man page
binsum Source code
methylation Man page
normalize.AffyBatch.pspline Man page Source code
normalize.pspline Man page Source code
originalBasis Source code
panel.pspline Man page Source code
print.turbotrend Source code
pspline Man page Source code
turbotrend Man page Source code

Files

DESCRIPTION
NAMESPACE
NEWS
R
R/normalize.AffyBatch.pspline.R
R/normalize.pspline.R
R/panel.pspline.R
R/pspline.R
R/turbotrend.R
build
build/vignette.rds
data
data/methylation.RData
inst
inst/CITATION
inst/doc
inst/doc/turbonorm.R
inst/doc/turbonorm.Rnw
inst/doc/turbonorm.pdf
man
man/methylation.Rd
man/normalize.pspline.Rd
man/panel.pspline.Rd
man/pspline.Rd
man/turbonorm-package.Rd
man/turbotrend.Rd
src
src/Rinit.c
src/binners.c
vignettes
vignettes/turbonorm.Rnw
vignettes/turbonorm.bib
TurboNorm documentation built on May 20, 2017, 9:51 p.m.

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