TurboNorm: A fast scatterplot smoother suitable for microarray normalization

A fast scatterplot smoother based on B-splines with second-order difference penalty. Functions for microarray normalization of single-colour data i.e. Affymetrix/Illumina and two-colour data supplied as marray MarrayRaw-objects or limma RGList-objects are available.

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("TurboNorm")
AuthorMaarten van Iterson and Chantal van Leeuwen
Bioconductor views CpGIsland DNAMethylation MethylationArray Microarray Normalization OneChannel Preprocessing TwoChannel
Date of publicationNone
MaintainerMaarten van Iterson <mviterson@gmail.com>
LicenseLGPL
Version1.22.0
http://www.humgen.nl/MicroarrayAnalysisGroup.html

View on Bioconductor

Files

DESCRIPTION
NAMESPACE
NEWS
R
R/normalize.AffyBatch.pspline.R R/normalize.pspline.R R/panel.pspline.R R/pspline.R R/turbotrend.R
build
build/vignette.rds
data
data/methylation.RData
inst
inst/CITATION
inst/doc
inst/doc/turbonorm.R
inst/doc/turbonorm.Rnw
inst/doc/turbonorm.pdf
man
man/methylation.Rd man/normalize.pspline.Rd man/panel.pspline.Rd man/pspline.Rd man/turbonorm-package.Rd man/turbotrend.Rd
src
src/Rinit.c
src/binners.c
vignettes
vignettes/turbonorm.Rnw
vignettes/turbonorm.bib

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