Biocview "MethylationArray"

A/B compartment inference from ATAC-seq and methylation array data
A/B compartment inference from ATAC-seq and methylation array data
A/B compartment inference from ATAC-seq and methylation array data
Access and analyze the Recount Methylation database
Accurate identification of co-methylated and differentially methylated regions in epigenome-wide association studies
Adjust for positional and batch effects using ComBat
Adjust for positional and batch effects using ComBat
A fast scatterplot smoother suitable for microarray normalization
A framework to prioritize DNA methylation aberrations based on conformational and cis-regulatory element enrichment
Analysing Illumina HumanMethylation BeadChip Data
Analysing Illumina HumanMethylation BeadChip Data
Analysing Illumina HumanMethylation BeadChip Data
Analyze Illumina Infinium DNA methylation arrays
Analyze Illumina Infinium DNA methylation arrays
Analyze Illumina Infinium DNA methylation arrays
BIMEGA: BIvariate Methylation and Expression GAussian mixture model
Bioc2019PanCancerStudy
Chip Analysis Methylation Pipeline for Illumina HumanMethylation450 and EPIC
Chip Analysis Methylation Pipeline for Illumina HumanMethylation450 and EPIC
Chip Analysis Methylation Pipeline for Illumina HumanMethylation450 and EPIC
Chip Analysis Methylation Pipeline for Illumina HumanMethylation450 and EPIC
Chip Analysis Methylation Pipeline for Illumina HumanMethylation450 and EPIC
Chip Analysis Methylation Pipeline for Illumina HumanMethylation450 and EPIC
Clustering of (epigenetic) DNA methylation data using a variational Bayes NMF algorithm
coMET: visualisation of regional epigenome-wide association scan (EWAS) results and DNA co-methylation patterns
coMET: visualisation of regional epigenome-wide association scan (EWAS) results and DNA co-methylation patterns
coMET: visualisation of regional epigenome-wide association scan (EWAS) results and DNA co-methylation patterns.
CommunityAMARETTO: A Computational Tool for the Discovery of Shared and Distinct Regulatory Mechanisms Across Biological Systems
Controlling bias and inflation in association studies using the empirical null distribution
Coordinate Covariation Analysis
Coordinate Covariation Analysis
Coordinate Covariation Analysis
Copy Number Analysis for 450k Illumina Methylation Arrays
Data preprocessing and quality control for Illumina HumanMethylation450 and MethylationEPIC BeadChip
Data preprocessing and quality control for Illumina HumanMethylation450 and MethylationEPIC BeadChip
Data preprocessing and quality control for Illumina HumanMethylation450 and MethylationEPIC BeadChip (USC version)
Enhanced copy-number variation analysis using Illumina DNA methylation arrays
Epigenetic Dissection of Intra-Sample-Heterogeneity
Epigenetic Dissection of Intra-Sample-Heterogeneity
Estimate the cell composition of whole blood in DNA methylation samples
Estimate the cell composition of whole blood in DNA methylation samples
Example experimental data for use with the methyvim package
GEM: fast association study for the interplay of Gene, Environment and Methylation
GEM: fast association study for the interplay of Gene, Environment and Methylation
Get CNV information from 450K array
Identify oncogenes and tumor suppressor genes from omics data
Identify oncogenes and tumor suppressor genes from omics data
Illumina 450K methylation array spatial analysis methods
Illumina methylation array analysis for large experiments
Illumina methylation array analysis for large experiments
ImagingAMARETTO: tools for interpreting multi-omics networks for relevance to clinical outcomes and radiographic and histopathology imaging-derived biomarkers
Maximum Likelihood Estimation of DNA Methylation and Hydroxymethylation Proportions
Maximum Likelihood Estimation of DNA Methylation and Hydroxymethylation Proportions
Methylated CpGs Set Enrichment Analysis
Methylated CpGs Set Enrichment Analysis
Methylation array and sequencing spatial analysis methods
Methylation array and sequencing spatial analysis methods
Methylation array and sequencing spatial analysis methods
MethylMix: Identifying methylation driven cancer genes
MethylMix: Identifying methylation driven cancer genes
MethylMix: Identifying methylation driven cancer genes
Model-based analysis of DNA methylation data
Muscle Epigenetic Age Test
Predicting Disease Progression Based on Methylation Correlated Blocks using Ensemble Models
Predicting Disease Progression Based on Methylation Correlated Blocks using Ensemble Models
Preprocessing of Illumina Infinium 450K data
Regulatory Network Inference and Driver Gene Evaluation using Integrative Multi-Omics Analysis and Penalized Regression
Regulatory Network Inference and Driver Gene Evaluation using Integrative Multi-Omics Analysis and Penalized Regression
Regulatory Network Inference and Driver Gene Evaluation using Integrative Multi-Omics Analysis and Penalized Regression
Repetitive Element Methylation Prediction
Repetitive Element Methylation Prediction
RnBeads
Targeted, Robust, and Model-free Differential Methylation Analysis
Targeted, Robust, and Model-free Differential Methylation Analysis
TCGAbiolinks: An R/Bioconductor package for integrative analysis with GDC data
TCGAbiolinks: An R/Bioconductor package for integrative analysis with GDC data
"TCGAbiolinksGUI: A Graphical User Interface to analyze cancer molecular and clinical data"
"TCGAbiolinksGUI: A Graphical User Interface to analyze cancer molecular and clinical data"
tensorICA
Tools For Analyzing Illumina Infinium DNA Methylation Arrays
Tools For Analyzing Illumina Infinium DNA Methylation Arrays
Tools for the analysis of heterogeneous tissues
Tools for the analysis of heterogeneous tissues
Visual and interactive quality control of large Illumina DNA Methylation array data sets
Visual and interactive quality control of large Illumina DNA Methylation array data sets