ds420/CETYGO: Quantifying the accuracy of cellular deconvolution
A package to quantify the CETYGO (CEll TYpe deconvolution GOodness) score for cellular deconvolution estimates calcuated using Houseman's reference based deconvolution method. Extends functionality in minfi package and therefore is primarily deisgned for analysis of DNA methlytaion datasets generated with Illumina microarrays. Additioanlly provides functions to perform simulations to assess the accuracy of new cell type reference panels.
Getting started
Browse package contents
Package details |
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| Bioconductor views | DNAMethylation Epigenetics MethylationArray Microarray QualityControl |
| Maintainer | |
| License | file LICENSE |
| Version | 0.99.0 |
| URL | https://github.com/ejh243/CETYGO |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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