TCGAbiolinks: TCGAbiolinks: An R/Bioconductor package for integrative analysis with GDC data
Version 2.6.1

The aim of TCGAbiolinks is : i) facilitate the GDC open-access data retrieval, ii) prepare the data using the appropriate pre-processing strategies, iii) provide the means to carry out different standard analyses and iv) to easily reproduce earlier research results. In more detail, the package provides multiple methods for analysis (e.g., differential expression analysis, identifying differentially methylated regions) and methods for visualization (e.g., survival plots, volcano plots, starburst plots) in order to easily develop complete analysis pipelines.

Package details

AuthorAntonio Colaprico, Tiago Chedraoui Silva, Catharina Olsen, Luciano Garofano, Davide Garolini, Claudia Cava, Thais Sabedot, Tathiane Malta, Stefano M. Pagnotta, Isabella Castiglioni, Michele Ceccarelli, Gianluca Bontempi, Houtan Noushmehr
Bioconductor views DNAMethylation DifferentialExpression DifferentialMethylation GeneExpression GeneRegulation MethylationArray Network Pathways Sequencing Survival
MaintainerAntonio Colaprico <[email protected]>, Tiago Chedraoui Silva <[email protected]>
LicenseGPL (>= 3)
Version2.6.1
URL https://github.com/BioinformaticsFMRP/TCGAbiolinks
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("TCGAbiolinks")

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TCGAbiolinks documentation built on Nov. 17, 2017, 1:12 p.m.