TCGAbiolinks: TCGAbiolinks: An R/Bioconductor package for integrative analysis with TCGA data
Version 2.4.2

The aim of TCGAbiolinks is : i) facilitate the TCGA open-access data retrieval, ii) prepare the data using the appropriate pre-processing strategies, iii) provide the means to carry out different standard analyses and iv) allow the user to download a specific version of the data and thus to easily reproduce earlier research results. In more detail, the package provides multiple methods for analysis (e.g., differential expression analysis, identifying differentially methylated regions) and methods for visualization (e.g., survival plots, volcano plots, starburst plots) in order to easily develop complete analysis pipelines.

Browse man pages Browse package API and functions Browse package files

AuthorAntonio Colaprico, Tiago Chedraoui Silva, Catharina Olsen, Luciano Garofano, Davide Garolini, Claudia Cava, Thais Sabedot, Tathiane Malta, Stefano M. Pagnotta, Isabella Castiglioni, Michele Ceccarelli, Gianluca Bontempi, Houtan Noushmehr
Bioconductor views DNAMethylation DifferentialExpression DifferentialMethylation GeneExpression GeneRegulation MethylationArray Network Pathways Sequencing Survival
Date of publicationNone
MaintainerAntonio Colaprico <antonio.colaprico@ulb.ac.be>, Tiago Chedraoui Silva <tiagochst@usp.br>
LicenseGPL (>= 3)
Version2.4.2
URL https://github.com/BioinformaticsFMRP/TCGAbiolinks
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("TCGAbiolinks")

Man pages

batch.info: TCGA batch information from Biospecimen Metadata Browser
BRCA_rnaseqv2: BRCA_rnaseqv2
calculate.pvalues: Calculate pvalues
clinBRCA: Clinical data TCGA BRCA
dataBRCA: TCGA data matrix BRCA
dataDEGsFiltLevel: TCGA data matrix BRCA DEGs
dataREAD: TCGA data SummarizedExperiment READ
dataREAD_df: TCGA data matrix READ
diffmean: Calculate diffmean methylation between two groups
gaiaCNVplot: Creates a plot for GAIA ouptut (all significant aberrant...
GDCdownload: Download GDC data
GDCprepare: Prepare GDC data
GDCprepare_clinic: Parsing clinical xml files
GDCquery: Query GDC data
GDCquery_clinic: Get GDC clinical data
GDCquery_Maf: Retrieve open access maf files from GDC server
geneInfo: geneInfo for normalization of RNAseq data
geneInfoHT: geneInfoHT for normalization of HTseq data
GenesCutID: GenesCutID
GeneSplitRegulon: GeneSplitRegulon
getAdjacencyBiogrid: Get a matrix of interactions of genes from biogrid
getDataCategorySummary: Create a Summary table for each sample in a project saying if...
getGDCprojects: Retrieve all GDC projects
getResults: Get the results table from query
ggbiplot: Biplot for Principal Components using ggplot2
isServeOK: Check GDC server status
matchedMetExp: Get GDC samples with both DNA methylation (HM450K) and Gene...
tabSurvKMcompleteDEGs: tabSurvKMcompleteDEGs
TCGAanalyze_analyseGRN: Generate network
TCGAanalyze_Clustering: Hierarchical cluster analysis
TCGAanalyze_DEA: Differentially expression analysis (DEA) using edgeR package.
TCGAanalyze_DEA_Affy: Differentially expression analysis (DEA) using limma package.
TCGAanalyze_DMR: Differentially methylated regions Analysis
TCGAanalyze_EA: Enrichment analysis of a gene-set with GO [BP,MF,CC] and...
TCGAanalyze_EAcomplete: Enrichment analysis for Gene Ontology (GO) [BP,MF,CC] and...
TCGAanalyze_Filtering: Filtering mRNA transcripts and miRNA selecting a threshold.
TCGAanalyze_LevelTab: Adding information related to DEGs genes from DEA as mean...
TCGAanalyze_networkInference: infer gene regulatory networks
TCGAanalyze_Normalization: normalization mRNA transcripts and miRNA using EDASeq...
TCGAanalyze_Pathview: Generate pathview graph
TCGAanalyze_Preprocessing: Array Array Intensity correlation (AAIC) and correlation...
TCGAanalyze_survival: Creates survival analysis
TCGAanalyze_SurvivalKM: survival analysis (SA) univariate with Kaplan-Meier (KM)...
TCGAbiolinks: The aim of TCGAbiolinks is : i) facilitate the TCGA...
TCGAprepare_Affy: Prepare CEL files into an AffyBatch.
TCGAprepare_elmer: Prepare the data for ELEMR package
TCGAquery_MatchedCoupledSampleTypes: Retrieve multiple tissue types from the same patients.
TCGAquery_SampleTypes: Retrieve multiple tissue types not from the same patients.
TCGAquery_subtype: Retrieve molecular subtypes for a given tumor
TCGAvisualize_BarPlot: Barplot of subtypes and clinical info in groups of gene...
TCGAvisualize_EAbarplot: barPlot for a complete Enrichment Analysis
TCGAvisualize_Heatmap: Heatmap with more sensible behavior using heatmap.plus
TCGAvisualize_meanMethylation: Mean methylation boxplot
TCGAvisualize_oncoprint: Creating a oncoprint
TCGAvisualize_PCA: Principal components analysis (PCA) plot
TCGAvisualize_starburst: Create starburst plot
TCGAvisualize_SurvivalCoxNET: Survival analysis with univariate Cox regression package...
TCGAVisualize_volcano: Creates a volcano plot for DNA methylation or expression

Functions

BRCA_rnaseqv2 Man page
GDCclientExists Source code
GDCclientInstall Source code
GDCclientPath Source code
GDCdownload Man page Source code
GDCdownload.aux Source code
GDCdownload.by.chunk Source code
GDCprepare Man page Source code
GDCprepare_clinic Man page Source code
GDCquery Man page Source code
GDCquery_Maf Man page Source code
GDCquery_clinic Man page Source code
GeneSplitRegulon Man page Source code
GenesCutID Man page Source code
TCGAVisualize_volcano Man page Source code
TCGAanalyze_Clustering Man page Source code
TCGAanalyze_DEA Man page Source code
TCGAanalyze_DEA_Affy Man page Source code
TCGAanalyze_DMR Man page Source code
TCGAanalyze_EA Man page Source code
TCGAanalyze_EAcomplete Man page Source code
TCGAanalyze_Filtering Man page Source code
TCGAanalyze_LevelTab Man page Source code
TCGAanalyze_Normalization Man page Source code
TCGAanalyze_Pathview Man page Source code
TCGAanalyze_Preprocessing Man page Source code
TCGAanalyze_SurvivalKM Man page Source code
TCGAanalyze_analyseGRN Man page Source code
TCGAanalyze_networkInference Man page Source code
TCGAanalyze_survival Man page Source code
TCGAbiolinks Man page
TCGAbiolinks-package Man page
TCGAprepare_Affy Man page Source code
TCGAprepare_elmer Man page Source code
TCGAquery_MatchedCoupledSampleTypes Man page Source code
TCGAquery_SampleTypes Man page Source code
TCGAquery_subtype Man page Source code
TCGAvisualize_BarPlot Man page Source code
TCGAvisualize_EAbarplot Man page Source code
TCGAvisualize_Heatmap Man page Source code
TCGAvisualize_PCA Man page Source code
TCGAvisualize_SurvivalCoxNET Man page Source code
TCGAvisualize_meanMethylation Man page Source code
TCGAvisualize_oncoprint Man page Source code
TCGAvisualize_starburst Man page Source code
addFilter Source code
batch.info Man page
calculate.pvalues Man page Source code
checkBarcodeDefinition Source code
checkDataCategoriesInput Source code
checkDataTypeInput Source code
checkLegacyPlatform Source code
checkProjectInput Source code
clinBRCA Man page
colDataPrepare Source code
colDataPrepareTARGET Source code
colDataPrepareTCGA Source code
dataBRCA Man page
dataDEGsFiltLevel Man page
dataREAD Man page
dataREAD_df Man page
diffmean Man page Source code
expandBarcodeInfo Source code
gaiaCNVplot Man page Source code
geneInfo Man page
geneInfoHT Man page
get.GRCh.bioMart Source code
get.cnv Source code
get.mut.gistc Source code
get.mut.gistc.information Source code
get.mutation Source code
getAdjacencyBiogrid Man page Source code
getBarcodeDefinition Source code
getBarcodeInfo Source code
getDataCategorySummary Man page Source code
getGDCprojects Man page Source code
getGDCquery Source code
getGistic Source code
getNbCases Source code
getNbFiles Source code
getProjectSummary Source code
getResults Man page Source code
getURL Source code
ggbiplot Man page Source code
humanReadableByteCount Source code
is.linux Source code
is.mac Source code
is.windows Source code
isServeOK Man page Source code
makeSEfromDNAmethylation Source code
makeSEfromGeneExpressionQuantification Source code
makeSEfromTranscriptomeProfiling Source code
map.ensg Source code
matchedMetExp Man page Source code
move Source code
onAttach Source code
parseXML Source code
print.header Source code
quantileNormalization Source code
readClinical Source code
readCopyNumberVariation Source code
readDNAmethylation Source code
readGeneExpressionQuantification Source code
readIsoformExpressionQuantification Source code
readProteinExpression Source code
readSimpleNucleotideVariationMaf Source code
readTranscriptomeProfiling Source code
readmiRNAIsoformQuantification Source code
remove.files.recursively Source code
tabSurvKMcompleteDEGs Man page
unlistlabels Source code

Files

DESCRIPTION
NAMESPACE
NEWS
R
R/TCGAbiolinks.R
R/analyze.R
R/clinical.R
R/download.R
R/internal.R
R/methylation.R
R/prepare.R
R/query.R
R/sysdata.rda
R/visualize.R
README.md
build
build/vignette.rds
data
data/BRCA_rnaseqv2.rda
data/dataBRCA.rda
data/dataDEGsFiltLevel.rda
data/dataREAD.rda
data/dataREAD_df.rda
data/datalist
data/geneInfo.rda
data/geneInfoHT.rda
data/tabSurvKMcompleteDEGs.rda
inst
inst/CITATION
inst/doc
inst/doc/clinical.R
inst/doc/clinical.Rmd
inst/doc/clinical.html
inst/doc/download_prepare.R
inst/doc/download_prepare.Rmd
inst/doc/download_prepare.html
inst/doc/index.R
inst/doc/index.Rmd
inst/doc/index.html
inst/doc/mutation.R
inst/doc/mutation.Rmd
inst/doc/mutation.html
inst/doc/query.R
inst/doc/query.Rmd
inst/doc/query.html
inst/doc/tcgaBiolinks.R
inst/doc/tcgaBiolinks.Rmd
inst/doc/tcgaBiolinks.html
man
man/BRCA_rnaseqv2.Rd
man/GDCdownload.Rd
man/GDCprepare.Rd
man/GDCprepare_clinic.Rd
man/GDCquery.Rd
man/GDCquery_Maf.Rd
man/GDCquery_clinic.Rd
man/GeneSplitRegulon.Rd
man/GenesCutID.Rd
man/TCGAVisualize_volcano.Rd
man/TCGAanalyze_Clustering.Rd
man/TCGAanalyze_DEA.Rd
man/TCGAanalyze_DEA_Affy.Rd
man/TCGAanalyze_DMR.Rd
man/TCGAanalyze_EA.Rd
man/TCGAanalyze_EAcomplete.Rd
man/TCGAanalyze_Filtering.Rd
man/TCGAanalyze_LevelTab.Rd
man/TCGAanalyze_Normalization.Rd
man/TCGAanalyze_Pathview.Rd
man/TCGAanalyze_Preprocessing.Rd
man/TCGAanalyze_SurvivalKM.Rd
man/TCGAanalyze_analyseGRN.Rd
man/TCGAanalyze_networkInference.Rd
man/TCGAanalyze_survival.Rd
man/TCGAbiolinks.Rd
man/TCGAprepare_Affy.Rd
man/TCGAprepare_elmer.Rd
man/TCGAquery_MatchedCoupledSampleTypes.Rd
man/TCGAquery_SampleTypes.Rd
man/TCGAquery_subtype.Rd
man/TCGAvisualize_BarPlot.Rd
man/TCGAvisualize_EAbarplot.Rd
man/TCGAvisualize_Heatmap.Rd
man/TCGAvisualize_PCA.Rd
man/TCGAvisualize_SurvivalCoxNET.Rd
man/TCGAvisualize_meanMethylation.Rd
man/TCGAvisualize_oncoprint.Rd
man/TCGAvisualize_starburst.Rd
man/batch.info.Rd
man/calculate.pvalues.Rd
man/clinBRCA.Rd
man/dataBRCA.Rd
man/dataDEGsFiltLevel.Rd
man/dataREAD.Rd
man/dataREAD_df.Rd
man/diffmean.Rd
man/gaiaCNVplot.Rd
man/geneInfo.Rd
man/geneInfoHT.Rd
man/getAdjacencyBiogrid.Rd
man/getDataCategorySummary.Rd
man/getGDCprojects.Rd
man/getResults.Rd
man/ggbiplot.Rd
man/isServeOK.Rd
man/matchedMetExp.Rd
man/tabSurvKMcompleteDEGs.Rd
tests
tests/testthat
tests/testthat.R
tests/testthat/test-analyse.R
tests/testthat/test-prepare-download.R
tests/testthat/test-query-clinical.R
tests/testthat/test-query.R
tests/testthat/test-visualize.R
vignettes
vignettes/.install_extras
vignettes/BRCA_cluster.png
vignettes/BRCA_heatmap.png
vignettes/CIMP-highvsCIMP-low_metvolcano.png
vignettes/EAplot.png
vignettes/PCAtop200DEGs.png
vignettes/PreprocessingOutput.png
vignettes/SurvivalCoxNETOutput.png
vignettes/_output.yaml
vignettes/acc_mean.png
vignettes/case1_EA.png
vignettes/case1_dnet.png
vignettes/case2_Heatmap.png
vignettes/case2_surv.png
vignettes/case4_elmer.png
vignettes/clinical.Rmd
vignettes/download_prepare.Rmd
vignettes/elmer1.png
vignettes/elmer2.png
vignettes/elmer3.png
vignettes/elmer4.png
vignettes/figure4cluster.png
vignettes/figure4surv.png
vignettes/figure5exp.png
vignettes/figure5met.png
vignettes/figure5star.png
vignettes/include
vignettes/include/after_body.html
vignettes/include/before_body.html
vignettes/include/header.html
vignettes/include/logo.png
vignettes/include/site.css
vignettes/include/symbol.png
vignettes/index.Rmd
vignettes/libs
vignettes/libs/bootstrap
vignettes/libs/bootstrap-3.3.5
vignettes/libs/bootstrap-3.3.5/css
vignettes/libs/bootstrap-3.3.5/css/bootstrap-theme.css
vignettes/libs/bootstrap-3.3.5/css/bootstrap-theme.css.map
vignettes/libs/bootstrap-3.3.5/css/bootstrap-theme.min.css
vignettes/libs/bootstrap-3.3.5/css/bootstrap.css
vignettes/libs/bootstrap-3.3.5/css/bootstrap.css.map
vignettes/libs/bootstrap-3.3.5/css/bootstrap.min.css
vignettes/libs/bootstrap-3.3.5/css/cerulean.min.css
vignettes/libs/bootstrap-3.3.5/css/cosmo.min.css
vignettes/libs/bootstrap-3.3.5/css/flatly.min.css
vignettes/libs/bootstrap-3.3.5/css/fonts
vignettes/libs/bootstrap-3.3.5/css/fonts/Lato.ttf
vignettes/libs/bootstrap-3.3.5/css/fonts/LatoBold.ttf
vignettes/libs/bootstrap-3.3.5/css/fonts/LatoItalic.ttf
vignettes/libs/bootstrap-3.3.5/css/fonts/NewsCycle.ttf
vignettes/libs/bootstrap-3.3.5/css/fonts/NewsCycleBold.ttf
vignettes/libs/bootstrap-3.3.5/css/fonts/OpenSans.ttf
vignettes/libs/bootstrap-3.3.5/css/fonts/OpenSansBold.ttf
vignettes/libs/bootstrap-3.3.5/css/fonts/OpenSansBoldItalic.ttf
vignettes/libs/bootstrap-3.3.5/css/fonts/OpenSansItalic.ttf
vignettes/libs/bootstrap-3.3.5/css/fonts/OpenSansLight.ttf
vignettes/libs/bootstrap-3.3.5/css/fonts/OpenSansLightItalic.ttf
vignettes/libs/bootstrap-3.3.5/css/fonts/Raleway.ttf
vignettes/libs/bootstrap-3.3.5/css/fonts/RalewayBold.ttf
vignettes/libs/bootstrap-3.3.5/css/fonts/Roboto.ttf
vignettes/libs/bootstrap-3.3.5/css/fonts/RobotoBold.ttf
vignettes/libs/bootstrap-3.3.5/css/fonts/RobotoLight.ttf
vignettes/libs/bootstrap-3.3.5/css/fonts/RobotoMedium.ttf
vignettes/libs/bootstrap-3.3.5/css/fonts/SourceSansPro.ttf
vignettes/libs/bootstrap-3.3.5/css/fonts/SourceSansProBold.ttf
vignettes/libs/bootstrap-3.3.5/css/fonts/SourceSansProItalic.ttf
vignettes/libs/bootstrap-3.3.5/css/fonts/SourceSansProLight.ttf
vignettes/libs/bootstrap-3.3.5/css/fonts/Ubuntu.ttf
vignettes/libs/bootstrap-3.3.5/css/journal.min.css
vignettes/libs/bootstrap-3.3.5/css/lumen.min.css
vignettes/libs/bootstrap-3.3.5/css/paper.min.css
vignettes/libs/bootstrap-3.3.5/css/readable.min.css
vignettes/libs/bootstrap-3.3.5/css/sandstone.min.css
vignettes/libs/bootstrap-3.3.5/css/simplex.min.css
vignettes/libs/bootstrap-3.3.5/css/spacelab.min.css
vignettes/libs/bootstrap-3.3.5/css/united.min.css
vignettes/libs/bootstrap-3.3.5/css/yeti.min.css
vignettes/libs/bootstrap-3.3.5/fonts
vignettes/libs/bootstrap-3.3.5/fonts/glyphicons-halflings-regular.eot
vignettes/libs/bootstrap-3.3.5/fonts/glyphicons-halflings-regular.svg
vignettes/libs/bootstrap-3.3.5/fonts/glyphicons-halflings-regular.ttf
vignettes/libs/bootstrap-3.3.5/fonts/glyphicons-halflings-regular.woff
vignettes/libs/bootstrap-3.3.5/fonts/glyphicons-halflings-regular.woff2
vignettes/libs/bootstrap-3.3.5/js
vignettes/libs/bootstrap-3.3.5/js/bootstrap.js
vignettes/libs/bootstrap-3.3.5/js/bootstrap.min.js
vignettes/libs/bootstrap-3.3.5/js/npm.js
vignettes/libs/bootstrap-3.3.5/shim
vignettes/libs/bootstrap-3.3.5/shim/html5shiv.min.js
vignettes/libs/bootstrap-3.3.5/shim/respond.min.js
vignettes/libs/bootstrap/css
vignettes/libs/bootstrap/css/flatly.min.css
vignettes/libs/bootstrap/css/fonts
vignettes/libs/bootstrap/css/fonts/Lato.ttf
vignettes/libs/bootstrap/css/fonts/LatoBold.ttf
vignettes/libs/bootstrap/css/fonts/LatoItalic.ttf
vignettes/libs/bootstrap/css/fonts/NewsCycle.ttf
vignettes/libs/bootstrap/css/fonts/NewsCycleBold.ttf
vignettes/libs/bootstrap/css/fonts/OpenSans.ttf
vignettes/libs/bootstrap/css/fonts/OpenSansBold.ttf
vignettes/libs/bootstrap/css/fonts/OpenSansBoldItalic.ttf
vignettes/libs/bootstrap/css/fonts/OpenSansItalic.ttf
vignettes/libs/bootstrap/css/fonts/OpenSansLight.ttf
vignettes/libs/bootstrap/css/fonts/OpenSansLightItalic.ttf
vignettes/libs/bootstrap/css/fonts/Raleway.ttf
vignettes/libs/bootstrap/css/fonts/RalewayBold.ttf
vignettes/libs/bootstrap/css/fonts/Roboto.ttf
vignettes/libs/bootstrap/css/fonts/RobotoBold.ttf
vignettes/libs/bootstrap/css/fonts/RobotoLight.ttf
vignettes/libs/bootstrap/css/fonts/RobotoMedium.ttf
vignettes/libs/bootstrap/css/fonts/SourceSansPro.ttf
vignettes/libs/bootstrap/css/fonts/SourceSansProBold.ttf
vignettes/libs/bootstrap/css/fonts/SourceSansProItalic.ttf
vignettes/libs/bootstrap/css/fonts/SourceSansProLight.ttf
vignettes/libs/bootstrap/css/fonts/Ubuntu.ttf
vignettes/libs/bootstrap/fonts
vignettes/libs/bootstrap/fonts/glyphicons-halflings-regular.eot
vignettes/libs/bootstrap/fonts/glyphicons-halflings-regular.svg
vignettes/libs/bootstrap/fonts/glyphicons-halflings-regular.ttf
vignettes/libs/bootstrap/fonts/glyphicons-halflings-regular.woff
vignettes/libs/bootstrap/fonts/glyphicons-halflings-regular.woff2
vignettes/libs/bootstrap/js
vignettes/libs/bootstrap/js/bootstrap.min.js
vignettes/libs/bootstrap/shim
vignettes/libs/bootstrap/shim/html5shiv.min.js
vignettes/libs/bootstrap/shim/respond.min.js
vignettes/libs/datatables-binding
vignettes/libs/datatables-binding/datatables.js
vignettes/libs/dt-core
vignettes/libs/dt-core-bootstrap
vignettes/libs/dt-core-bootstrap/css
vignettes/libs/dt-core-bootstrap/css/dataTables.bootstrap.extra.css
vignettes/libs/dt-core-bootstrap/css/dataTables.bootstrap.min.css
vignettes/libs/dt-core-bootstrap/js
vignettes/libs/dt-core-bootstrap/js/dataTables.bootstrap.min.js
vignettes/libs/dt-core-bootstrap/js/jquery.dataTables.min.js
vignettes/libs/dt-core/css
vignettes/libs/dt-core/css/jquery.dataTables.extra.css
vignettes/libs/dt-core/css/jquery.dataTables.min.css
vignettes/libs/dt-core/js
vignettes/libs/dt-core/js/jquery.dataTables.min.js
vignettes/libs/dt-ext-autofill
vignettes/libs/dt-ext-autofill/css
vignettes/libs/dt-ext-autofill/css/autoFill.dataTables.min.css
vignettes/libs/dt-ext-autofill/js
vignettes/libs/dt-ext-autofill/js/dataTables.autoFill.min.js
vignettes/libs/dt-ext-buttons
vignettes/libs/dt-ext-buttons/css
vignettes/libs/dt-ext-buttons/css/buttons.dataTables.min.css
vignettes/libs/dt-ext-buttons/js
vignettes/libs/dt-ext-buttons/js/buttons.colVis.min.js
vignettes/libs/dt-ext-buttons/js/buttons.flash.min.js
vignettes/libs/dt-ext-buttons/js/buttons.html5.min.js
vignettes/libs/dt-ext-buttons/js/buttons.print.min.js
vignettes/libs/dt-ext-buttons/js/dataTables.buttons.min.js
vignettes/libs/dt-ext-colreorder
vignettes/libs/dt-ext-colreorder/css
vignettes/libs/dt-ext-colreorder/css/colReorder.dataTables.min.css
vignettes/libs/dt-ext-colreorder/js
vignettes/libs/dt-ext-colreorder/js/dataTables.colReorder.min.js
vignettes/libs/dt-ext-fixedcolumns
vignettes/libs/dt-ext-fixedcolumns/css
vignettes/libs/dt-ext-fixedcolumns/css/fixedColumns.dataTables.min.css
vignettes/libs/dt-ext-fixedcolumns/js
vignettes/libs/dt-ext-fixedcolumns/js/dataTables.fixedColumns.min.js
vignettes/libs/dt-ext-fixedheader
vignettes/libs/dt-ext-fixedheader/css
vignettes/libs/dt-ext-fixedheader/css/fixedHeader.dataTables.min.css
vignettes/libs/dt-ext-fixedheader/js
vignettes/libs/dt-ext-fixedheader/js/dataTables.fixedHeader.min.js
vignettes/libs/dt-ext-keytable
vignettes/libs/dt-ext-keytable/css
vignettes/libs/dt-ext-keytable/css/keyTable.dataTables.min.css
vignettes/libs/dt-ext-keytable/js
vignettes/libs/dt-ext-keytable/js/dataTables.keyTable.min.js
vignettes/libs/dt-ext-responsive
vignettes/libs/dt-ext-responsive/css
vignettes/libs/dt-ext-responsive/css/responsive.dataTables.min.css
vignettes/libs/dt-ext-responsive/js
vignettes/libs/dt-ext-responsive/js/dataTables.responsive.min.js
vignettes/libs/dt-ext-rowreorder
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vignettes/libs/dt-ext-rowreorder/css/rowReorder.dataTables.min.css
vignettes/libs/dt-ext-rowreorder/js
vignettes/libs/dt-ext-rowreorder/js/dataTables.rowReorder.min.js
vignettes/libs/dt-ext-scroller
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vignettes/libs/dt-ext-scroller/js
vignettes/libs/dt-ext-scroller/js/dataTables.scroller.min.js
vignettes/libs/dt-plugin-natural
vignettes/libs/dt-plugin-natural/natural.js
vignettes/libs/dt-plugin-searchhighlight
vignettes/libs/dt-plugin-searchhighlight/dataTables.searchHighlight.css
vignettes/libs/dt-plugin-searchhighlight/dataTables.searchHighlight.min.js
vignettes/libs/dt-plugin-searchhighlight/jquery.highlight.js
vignettes/libs/htmlwidgets
vignettes/libs/htmlwidgets/htmlwidgets.js
vignettes/libs/jquery
vignettes/libs/jquery-1.11.3
vignettes/libs/jquery-1.11.3/jquery.min.js
vignettes/libs/jquery/LICENSE.txt
vignettes/libs/jquery/jquery.min.js
vignettes/libs/jqueryui-1.11.4
vignettes/libs/jqueryui-1.11.4/README
vignettes/libs/jqueryui-1.11.4/images
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vignettes/libs/jqueryui-1.11.4/jquery-ui.min.js
vignettes/libs/jqueryui-1.11.4/jquery-ui.structure.css
vignettes/libs/jqueryui-1.11.4/jquery-ui.structure.min.css
vignettes/libs/jqueryui-1.11.4/jquery-ui.theme.css
vignettes/libs/jqueryui-1.11.4/jquery-ui.theme.min.css
vignettes/libs/jszip
vignettes/libs/jszip/jszip.min.js
vignettes/libs/navigation-1.1
vignettes/libs/navigation-1.1/FileSaver.min.js
vignettes/libs/navigation-1.1/codefolding.js
vignettes/libs/navigation-1.1/sourceembed.js
vignettes/libs/navigation-1.1/tabsets.js
vignettes/libs/nouislider
vignettes/libs/nouislider/jquery.nouislider.min.css
vignettes/libs/nouislider/jquery.nouislider.min.js
vignettes/libs/pdfmake
vignettes/libs/pdfmake/pdfmake.min.js
vignettes/libs/pdfmake/vfs_fonts.js
vignettes/libs/selectize
vignettes/libs/selectize/selectize.bootstrap3.css
vignettes/libs/selectize/selectize.min.js
vignettes/libs/tocify-1.9.1
vignettes/libs/tocify-1.9.1/jquery.tocify.css
vignettes/libs/tocify-1.9.1/jquery.tocify.js
vignettes/mutation.Rmd
vignettes/oncoprint.png
vignettes/query.Rmd
vignettes/tcgaBiolinks.Rmd
TCGAbiolinks documentation built on May 20, 2017, 9:14 p.m.